K31536

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31536

Determination of introduced cDNA(s)

  • J023069F08 - Rice Full-length cDNAs - Original: J023069F08

    full reading [+] show sequence

    Nucleotide sequence: J023069F08 - full reading 
    GCCTTCCCCT CTTCTCCCCT CGCCTCGGCC CGCCGGCGGC CGGCCACCAC 
    CGCCACCTCC TCCTCCGATG GATCTCGCCG CCGTCCACGC CGCCCTCGCC 
    GGCAAGTCCT ACTCCTCCGT CGCCCCGCTC TGCGACGACC TCTTCCTCCA 
    GGCCGCGTCC CGGGGCGCCG CCACCGACGG CTGGCCCTAC GCCGTGCACC 
    TCCTCGCCCA CCTCTACCTC AACGACCTGA ACAGCGCGAG GTTTCTGTGG 
    AAGTCGACGC CGCAGGAGGC GAAGGACGCG CGGCCGGAGC TCGCCGCCGT 
    CTGGAGGATC GGGCAGTGCC TCTGGAACCG CGATTACGCG GGCGTCTACG 
    CGGCCGCGCA GGGGTTCGAG TGGAGCCCTG AAATCGCCGA CTTCGTGGCC 
    GCCTTCCTAG AAAGCTACAG AAAGAGGATT TTCCAGTTGT TGACTTCTGC 
    ATATTCCACA ATCAGCGTTG CTGATGTGGC TCACTTCATG GGGATGAATG 
    AGGAGGATGC TACTAACTAT GCCATGCAAA ACGGTTGGAG CTTGGATGCG 
    GCAGCCAGGA TGCTTACTGT CGTAAAACCA AAGGTTAAGA CTAACCAGAA 
    GCTCGATGCA AGCAAACTTC AGCGATTAAC TGAATGCGTC TTCCACCTGG 
    AGCACTAAAG TCCAGCATTA CGGGCATCCC GCATGACTCT TAAGAAACCT 
    ATTTATCATA TGATGCCAAG CCGAGATTGC CTTTTCTCCG GAAATCAGAG 
    TTAGTTCAGT GTTGAATTTC CATCTGCAAT TGATTTCTGG TTAGCGACCT 
    TAGCCTTTCT CTGTAATGGT TGCTTGTTGA TATGGTTGGT GGTGGTTCTT 
    GCCAGACTTA CACTGAAGTA AATGACACTG CTTAGTGTCA ACTCGTAAGT 
    TAACGTTGTT TTTTGAAGTA TGAGTTGAAA ATTGTTTCCC GTTTTAC

    Gene models with high sequence identity

    1. AT4G14110.1 [+] show detail - COP9 signalosome, subunit CSN8
      E-value: 1e-62; Score: 237.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther COP9 SIGNALOSOME COMPLEX SUBUNIT 8 1.1e-44
    HMMPfam COP9 signalosome, subunit CSN8 5.9e-38

    See the detailed result >

    AT4G14110.1

    Model type
    Protein coding
    Short Description
    COP9 signalosome, subunit CSN8
    Curator Summary
    Represses photomorphogenesis and induces skotomorphogenesis in the dark. A component of the COP9 signalosome complex.
    Computational Description
    CONSTITUTIVE PHOTOMORPHOGENIC 9 (COP9); CONTAINS InterPro DOMAIN/s: COP9 signalosome, subunit CSN8 (InterPro:IPR019280); Has 218 Blast hits to 218 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 136; Fungi - 17; Plants - 54; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR