K31546

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31546

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31546

Determination of introduced cDNA(s)

  • J013116C06 - Rice Full-length cDNAs - Original: J013116C06

    full reading [+] show sequence

    Nucleotide sequence: J013116C06 - full reading
    GCTGGTCTCC ACCCTCCCTT TCTCTCTCTA GTCCTCTAGA GCCGAGGGTT 
    GCTGCGAGGA AAGCGTAGGA GAGAGGGTTG CTGGCTGCAG CCCCGGCGAG
    AAGCGCCATT GTTGTCGTCG TTGGGCCAAG AACCAAGAAA CCAAGAAGAC
    AAGAGGAGGA GGAGGGGGGA AGAAGACGGA AGAGAGAGAG GAAGAGGCAC
    TGGATAGGTG CATCCTTTGC CTCTAGCCGC TTTCTCTTTC TCCTTCCTGG
    AGGGGGGAGA GAGAGAGAGG AGTGGGAGAG GAAAGGAGAG TAGATGGGCG
    AGATGGTCTT GGCCGGGTAT GGCATGGACA AGGCGGTGAG GAGCAGCGTC
    AGCTTCGAGA CGCCGTGCGG CAGGCTGCTG CGCGAGCTCG AGCAAATATG
    GACTGAGATT GGGGAGCGCG AAGAAGATAA AGATCGCATG TTCTTAGAAC
    TTGAAACAGA GTGCATGCGT GTGTACCGTC GAAAGGTTGA TAGTGCCAAT
    GCTGAGAGAT CCCAGCTCCG TCAGTCATTG ATGGCCAAAG AAGCAGAGCT
    TAAAGTTTTA GTGGCTTCAA TAGGTGAAAT TACCCCAAAA TTTAAGGTGG
    ATGAAAAGCA ATCATTGAAA GAGCAACTTG CCAAAGTGAC GCCTCTACTG
    GAAGATCTCA GGTCAAAGAA AGAAGAAAGA ATAAAACAAT TCTCACTTGT
    CCAATCTCAA ATCGAGAAGA TAAAGCACAA ATTTCGGATC ACAATAATCA
    GCATGACAAT GGTCCGGTCA ATCATTCCAA GGACAATCAT GATTTGTCAA
    CCAGAAGGCT TTCTGATCTT CAAGCGGAGC TTCGCAATTT ACAGAAAGAG
    AAGTCTGATC GCCTTCAGAA GGTCTTCATA TACGTCGATG AAGTGCACTG
    CCTATGCTCT GTGCTTGGGA TGGATTTTGC AAAGACAGTT AAAGATGTGC
    ATCCAAGTTT ACATGGGGCC AACTCAGAAA ATTCAACGAA TATCAGTGAT
    AGCACTCTTG AAGGTCTTAC TGAGACCATC CTTAAGCTCA AAGCAGAAAA
    GAGGACTAGA GTTTCGAAGT TGCAAGAAAT CGTCGGAAAG CTCCACAAGT
    TATGGAATTT GATGGAGTCA ACTGAACAAG AGAGGAGACA TTTCACCAGA
    GTAGCTGCTG TTCTTGGATC TACTGAGGAA GAGATCACTT CATCTAGTGT
    CCTGTCGCTG GAGACAATTC AGGAGACAGA AGAGGAAGTT GAGAGACTAA
    CTAAACAAAA GGCAAGTAGA ATGAAGGAGC TTGTTCTTAA GAAAAGGTTA
    GAGCTAGAAG ATATCTGCAG TAATGCGCAT ATGGAGCCTG ATATGAGCAC
    AGCACCTGAG AAGATAACCG CATTGATTGA TTCTGGTCTA GTGGATCCTT
    GTGAACTTCT TTCCAGCATT GAAACACAAA TAGCAAAAGC GAGGGAGGAG
    TCCCTAACCA GGAAAGATAT CATGGAGAAA GTAGACAGAT GGCTATCAGC
    TTGTGATGAA GAAACTTGGC TTGAGGAATA TAACCAAGAT AGTAGCAGGT
    ATAGTGCTGG TAGGGGTGCC CATATAAATC TCAAGCGTGC AGAGAAGGCA
    AGGATACTTG TTCAAAAAAT ACCATCAATG ATTGACAACT TGATAGCTAA
    AACATTTGCG TGGGAGGATG AAAGAAGTGT GCCATTTTTA TATGATGGAG
    CCCGTCTTGT TGCCATTTTG GAGGAGCAAA AACTCAGAAG GGTACAAAAG
    GAAGAAGACA AGAGACGACA CCGGGACCAG AAGAAACTGC AAAGCTTATT
    GCTTAAGGAG AAAGAGTTGA TTTTCGGCTC CAAACCTAGT CCAAAAAAGA
    CAAGCAGCTT TAATAGGAGG ACGAGCAGCC ATCACCCGAA TGGAAATGGA
    GCTGGGTTCA TGACCCCGGT GCCCCGTAGA GTTTCTGCAG GCAGTGCCAC
    TCCTGAGCTT CTAACTCCAC GCTCATATTC TGGACGGTAC AATAATTACT
    TCAAAGAGAA CAGGAGGCTG GCTGCTGCAC CACTGAACTT CTCAACGGTT
    TCGAAGGAGG ATAGTATGTC ATCCTTTGCC TCCATCAGCG GCTCAGAACC
    TGATTCTCCT TTGGTTTTGC ACTGAGATCC CATCGTTCGA TTGGACATTT
    TCGAGAATGT CACAGTTGAT CTTTTGAGGT TCTGATAATC CTGATTTCCA
    AATGCTGCAT TTCTGGTTAG GGATGAGAGA CTTCTCAGCA AGAAGGATGG
    TAGTGAAGAC TATCCACGAC ATTGGGCCAT TGTGTGTTAA CTGGTTGACA
    TTGCTAATGA GTGACGACAG GTTGTGACAG GATTTAGATA AGATTTGCCT
    GTAGATATAT GACCTAACAT CTGCGGTGCT GTTGTACCTA AATTACGTCG
    ATTGATCAGT GGGTTGGTTA GGAAGCATGC CTAAGTTGTG CATTATATTC
    GTTTTCTTGG TATTCTTTGA GTTTTGTATT TAGTCATTGT TTTGCATGTG
    AAAAGGAGTT GGTGTTGATT TGCAATCCAA AGGTGCTGTG TAATTTCATC
    CTGCAGACTC AACCTGAGGC CTTTGATTTG TGTGCTGTAC TGCTATGGAA
    ATCGTAGTTC ATACTTCATT CAGGAAGGTA ACTCAAAGGT CGCATATGTT
    TTACTACCAT TTAGTTCATA CTTCATACTT ATCTACTCCC TTCGTTTCAC
    AATGTAAGAC TTTCTAATAT TGCCCACATA CATTTAGATG TTAATGAATC
    TAGACATATG TGTGTTTAGA TTTATTATCT ATATGTATGT GGATAATGTT
    AGAAAGTCTT ACATTGTGAA ACGGATGGAG TACTTGATTA TCGGTAAGAA
    ATAAAACTAT ATGTTACAAA CCTAACAAGT GGGCTAAGCA ATGCAGTAGA
    AGCAAGTGGA CTTGTTACCA ATTGCTGCTG CAATTGTGGG ATCAAAACTG
    TTGGTCAAGG ACTGAAGATT TGGGCGAATA TTGAATTATA TTGATATAAG
    CTCCTCCTAA TGGAGTAACC AAGTCGCTTA CAACGGGTAA TTAAAATACA
    GGAAAGAAGA AAACAAGGAG GGAGCATACT AGTACATAAT AAAGAGAAAG
    AAACAGAATT AAACATGGGA GGAGCCCGAA GAAATAGCAA TTGAGAAGAC
    AGCCTTCCAC CCATCTAGGG CCGGTCCATC TGCTTCTTTG ATGTAAAATT
    CACGCACCTG ATGGTGGTTG ATTATTGAAG ATAACGTTGT TTTTGTGATT
    CCAAATCCTC CAAAAAGCAG AGGAGATAGA AGCTCTGATA ATCTTTCATT
    GCGATAGAAG CTCTGATAGT CTTCAACTGA GGAAATATTT GGCCAGCACC
    CCTATTTTGG ACCAGAAAGA AGCAAATTAC CTTTTGCTGA CGGAGGGAGT
    ACATTTTACA ACACCCTTGC TGCATTTTGG TCTTCCAAAG ATATAGGGAG
    GCCTGACATG TGTAAAGAAC AAGCCTGTGT AGTAGCTAAA ACGCCAGTGA
    ACAGCAGAAC AGTAAACAAC TTGAGAATTA CCCCTTTCTT AGCATGAAAC
    GGCAACTCCA AGATAAAGTT GACACGCAGT AGCAAAGTTC AATTGTATTA
    CTGTACAGTT TGGCAACACG ATTTCATCTT TTGACGCT

    Gene models with high sequence identity

    1. AT2G01910.2 [+] show detail - Microtubule associated protein (MAP65/ASE1) family protein
      E-value: 3e-128; Score: 457.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Microtubule-associated protein, MAP65/ASE1-type 2.8e-60
    HMMPanther Microtubule-associated protein, MAP65/ASE1-type 8.3e-102
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT2G01910.2

    Model type
    Protein coding
    Short Description
    Microtubule associated protein (MAP65/ASE1) family protein
    Curator Summary
    Binds microtubules. Induces a crisscross mesh of microtubules, not bundles. Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria.
    Computational Description
    ATMAP65-6; CONTAINS InterPro DOMAIN/s: Microtubule-associated protein, MAP65/ASE1-type (InterPro:IPR007145); BEST Arabidopsis thaliana protein match is: microtubule-associated protein 65-7 (TAIR:AT1G14690.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR