K31605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31605

Determination of introduced cDNA(s)

  • J013134K18 - Rice Full-length cDNAs - Original: J013134K18

    full reading [+] show sequence

    Nucleotide sequence: J013134K18 - full reading
    GGCTCCACTC CCCCCTCCGC TCCGCCGCAC CACGCCCTAC GACACCAACC 
    AAACCCTCCT CCTAGCCCCC CGGCGGCGAT GGCCGGCGTC GGCGGCAGCA
    GCAGCGGCGG CGGCGACGTG GAGATGGGCG GGTGGTCGGA GCTCCTCCAC
    TCCTCCACTA AGCTCCTCGA GCAGGCCGCC CCCACCCCGC ACTTCCCTCC
    CCTCCAGAGG AACCTGGACC AGCTGGAGGT GCTCTCCACC AAGCTCAAGG
    CCAAGACGGT GCGCGCCGAG GCGCCCGTGC AGTCGCTCTC CGCCACCAGG
    TTGTTGGCGC GCGAGGGGAT CAATGCGGAG CAGCTCGCCA GGGACCTCAA
    ATCCTTCGAA CTTAAGACCA CATTTGAGGA TGTTTTTCCA TCTGAAGCAA
    CTACTGTCGA GGAGTACCTG CAGCAGCTTC ATGAAATGGC AATCGTCTCA
    TCCATTCAAG AAGCACAAAA GGACAACTTA AGGAGTTTTA ACAATTATAT
    GATGCAAGTT CTCGAGGATG ATTGGCAGAA GGAGAAGCGA GACTTCTTGC
    AGAGTCTAAG CCGACTCTCT ACATTACCGA AAAGAAACAC TAATCTCATG
    GCCAGTGGGA TTTCTCGTCC TGCTCTGATG CCATCTTCAG CTTCCAGTCC
    CCAATCTTCG TCCGGTCTGC CATCTAAGGA AGTCATGCCC ATACCTAACA
    AAACTATAAT TGAAAACAAA TCTTCAGTTT ATGCTGCAGT TGTGAGAGAT
    CTTAATGATG CTAGAGGGCG CAGCCTACCT TTTGGTCCTG CTACAGCATT
    CAGGGCTGCT TATGAGTCTT TATCTGTTGG TGCTATTGGG ACAAAATCAG
    TGACCATGCA TAAAGTGTGG CATTTAATTC AGGCATTAGT TGGGGAAGGG
    TCAACTCATC GAAACATTTC AAGAAAAATG TCACTAGTGA TTGGTGCTAG
    ACGACACCTT GAGTGGGGTC ATGAAAAGTA CATACTTGAG ACCATCAATA
    GCCATCCGGC TCTAGCTGCT CTTGGTGGAT CTGTTGGCAA TCTTCAGAAG
    ATTCGCGCAT TTCTTCGGGT CCGTTTGCGG GATCATGGTG TGCTAGACTT
    TGATGCAACT GATCTGCGTA GACAGCCACC AGTGGACACA ACATGGCAAC
    AGATTTATTT CTGCTTGAGA ACCGGATACT ATGATGAGGC AAGACAAGTT
    GCCCAATCAT CTCGTGCTGC ATTCAACTTT GCTCCCCTGC TTGTAGAATG
    GATTACTACT AATGGTGCTG TATCCCCAGA GACTGCTCTG ACAGCTTCTG
    AGGAATGTGA CAAAATGCTG AGAATGGGTG ATCGACCTGG CCGTCCTGGT
    TATGATAGGA AGAAGTTGCT CCTTTATGCC ATGATCTGTG GTTGTCGACG
    TCAAATCGAC AGATTGCTTA AAGATCTGCC AACACTTTTC AATACTATAG
    AGGATTTCTT GTGGTTCAAA TTGTCAGCTC TGCGGGAGTA CACCAGTGCA
    TCTTCTTCTA ATGTTTCAAA TGAAGGCTTG GTGCCTTATA CTCTGGAGGA
    TCTGCAAAGT TACTTAAACA AATTTGAACC ATCATATTAT ACAAAGAATG
    GAAAAGACCC CTTGGTCTAT CCATATGTTC TGCTGTTAAG CATCCAATTG
    CTTCCAGCAA TTCTTTATTT GTCTAAAGAA GTTGGAGAGG AAGGATACCA
    TGTAGATGCT GTGCATATTT CAATTGCTTT ATCTGATCAT GGTGTTCTCC
    CTGATGGTGT TGGGTCAGGC CAGAAGATGG GTATCATGGA TGCTTGTGCA
    GAAGCTGCCA GTATAATACG GCAGTATGGC TCTATTTATT TGCGTAATGG
    TAACCTTGAT TTGGCCTTGG AGTATTATGC ACAGTCTGCT GCTGCAATGG
    GTGGAGGAGA GGTATCATGG ATTGGTCGAG GGAATGCTGA TCAGCAGCGG
    CAGCGAAATC TAATGTTGAA GCAACTGCTG ACAGAGATAT TACTAAGGGA
    TGGTGGCATT CAACTTTTGC TTGGTCCAAG TGGAATGGGG GAAGAAGGAG
    AATTAAAGAA GTATATGATG GATTGGAGAA GCAGGCAGCA ATTCTTACTT
    GAAGCTGCCC ATCAGTGTCA TGAGGCAGGC CTCTATGACA AATCAGTGGA
    AATTCATAAA AGAGTTGGAG CTTTTGCCAT GGCACTTCAG ACAATAAATA
    AGTGCCTGTC GGATGCAATA TGTGCCATGG CACGCAGTAT GTTAGATGGT
    GAAAGTCGTG CTGCTGCTCT AATTCATTCT GGTAATGAAA TTATGGAAAC
    TGCCAGATAT TCGGAAGCCA GTGTTCAAGA CAAGGACCTC ATATCTGAGC
    AACAAACTGT ACTGAGACAG CTTGAAGCTA TTCTCCATAT CTATAGGCTT
    GCTCGAGCTG GACAGACTTT AGATGCTTTG AGGGAAACCA TCAAACTCCC
    ATTTCTTCAT TTGGATCCTC AGGCTCCAAA TGTGACAGTT GATGTGTTCA
    GAAACTTGTC ACCGCATGTT CAAGCTTGTG TGCCAGATCT CTTGAAGGTT
    GCTCTAAATT GTATGGACAA TGTTAGAGAT ACTGATGGGA CCTTGCGTGC
    AGTCAAGTCA AAGATCGCAA ACCTCGTGGC AAGCAACATG AGCAGGAACT
    GGCCACAGGA TTTGTATCAG AAGGTGGCGC AGTGCATATG ATGGGGATCT
    GTCCGGCCAT ATACCTGACA CTATCAAAAG CTTCCGAAAG CACGCGGAAA
    TGCTTTTCTG TGTTTGTGCT GGTGATGTGC TTATGGTCCG AACCGGAATG
    TTTCAGACTG GTGGATGCAA ATCCTTTTGA TCACTCAGCT ATATCAGCCA
    AAAGAGAACA TATATGCCAT GCCCGGGGGT CATCTGATGT GTAGTGTGTG
    AAATGTGAAA CTTAATGGCA CCAATCAGAA TCTGTATTAT TAATCCATGG
    TTGTAAAGCA GTTTCTGAAT ATCCAAATGC ACTGTTGCTT AGTTCGAGGA
    GATTATCTGC GGCTCTATTG TACTGTCATT CTGTTGGCTT ATCCCACTTA
    ATCCCGCGTC CTATCTCGGA TCT

    Gene models with high sequence identity

    1. AT2G41620.1 [+] show detail - Nucleoporin interacting component (Nup93/Nic96-like) family protein
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Nucleoporin interacting component Nup93/Nic96 1.4e-126
    HMMPanther Nucleoporin interacting component Nup93/Nic96 4.7e-59
    superfamily vWA-like 0.0000001

    See the detailed result >

    AT2G41620.1

    Model type
    Protein coding
    Short Description
    Nucleoporin interacting component (Nup93/Nic96-like) family protein
    Computational Description
    Nucleoporin interacting component (Nup93/Nic96-like) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: transport; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: Nucleoporin interacting component (Nup93/Nic96-like) family protein (TAIR:AT3G57350.1); Has 357 Blast hits to 350 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 130; Plants - 48; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR