K31605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31605

Determination of introduced cDNA(s)

J013134K18 - Rice Full-length cDNAs - Original: J013134K18

full reading [+] show sequence

GGCTCCACTC CCCCCTCCGC TCCGCCGCAC CACGCCCTAC GACACCAACC 
AAACCCTCCT CCTAGCCCCC CGGCGGCGAT GGCCGGCGTC GGCGGCAGCA 
GCAGCGGCGG CGGCGACGTG GAGATGGGCG GGTGGTCGGA GCTCCTCCAC 
TCCTCCACTA AGCTCCTCGA GCAGGCCGCC CCCACCCCGC ACTTCCCTCC 
CCTCCAGAGG AACCTGGACC AGCTGGAGGT GCTCTCCACC AAGCTCAAGG 
CCAAGACGGT GCGCGCCGAG GCGCCCGTGC AGTCGCTCTC CGCCACCAGG 
TTGTTGGCGC GCGAGGGGAT CAATGCGGAG CAGCTCGCCA GGGACCTCAA 
ATCCTTCGAA CTTAAGACCA CATTTGAGGA TGTTTTTCCA TCTGAAGCAA 
CTACTGTCGA GGAGTACCTG CAGCAGCTTC ATGAAATGGC AATCGTCTCA 
TCCATTCAAG AAGCACAAAA GGACAACTTA AGGAGTTTTA ACAATTATAT 
GATGCAAGTT CTCGAGGATG ATTGGCAGAA GGAGAAGCGA GACTTCTTGC 
AGAGTCTAAG CCGACTCTCT ACATTACCGA AAAGAAACAC TAATCTCATG 
GCCAGTGGGA TTTCTCGTCC TGCTCTGATG CCATCTTCAG CTTCCAGTCC 
CCAATCTTCG TCCGGTCTGC CATCTAAGGA AGTCATGCCC ATACCTAACA 
AAACTATAAT TGAAAACAAA TCTTCAGTTT ATGCTGCAGT TGTGAGAGAT 
CTTAATGATG CTAGAGGGCG CAGCCTACCT TTTGGTCCTG CTACAGCATT 
CAGGGCTGCT TATGAGTCTT TATCTGTTGG TGCTATTGGG ACAAAATCAG 
TGACCATGCA TAAAGTGTGG CATTTAATTC AGGCATTAGT TGGGGAAGGG 
TCAACTCATC GAAACATTTC AAGAAAAATG TCACTAGTGA TTGGTGCTAG 
ACGACACCTT GAGTGGGGTC ATGAAAAGTA CATACTTGAG ACCATCAATA 
GCCATCCGGC TCTAGCTGCT CTTGGTGGAT CTGTTGGCAA TCTTCAGAAG 
ATTCGCGCAT TTCTTCGGGT CCGTTTGCGG GATCATGGTG TGCTAGACTT 
TGATGCAACT GATCTGCGTA GACAGCCACC AGTGGACACA ACATGGCAAC 
AGATTTATTT CTGCTTGAGA ACCGGATACT ATGATGAGGC AAGACAAGTT 
GCCCAATCAT CTCGTGCTGC ATTCAACTTT GCTCCCCTGC TTGTAGAATG 
GATTACTACT AATGGTGCTG TATCCCCAGA GACTGCTCTG ACAGCTTCTG 
AGGAATGTGA CAAAATGCTG AGAATGGGTG ATCGACCTGG CCGTCCTGGT 
TATGATAGGA AGAAGTTGCT CCTTTATGCC ATGATCTGTG GTTGTCGACG 
TCAAATCGAC AGATTGCTTA AAGATCTGCC AACACTTTTC AATACTATAG 
AGGATTTCTT GTGGTTCAAA TTGTCAGCTC TGCGGGAGTA CACCAGTGCA 
TCTTCTTCTA ATGTTTCAAA TGAAGGCTTG GTGCCTTATA CTCTGGAGGA 
TCTGCAAAGT TACTTAAACA AATTTGAACC ATCATATTAT ACAAAGAATG 
GAAAAGACCC CTTGGTCTAT CCATATGTTC TGCTGTTAAG CATCCAATTG 
CTTCCAGCAA TTCTTTATTT GTCTAAAGAA GTTGGAGAGG AAGGATACCA 
TGTAGATGCT GTGCATATTT CAATTGCTTT ATCTGATCAT GGTGTTCTCC 
CTGATGGTGT TGGGTCAGGC CAGAAGATGG GTATCATGGA TGCTTGTGCA 
GAAGCTGCCA GTATAATACG GCAGTATGGC TCTATTTATT TGCGTAATGG 
TAACCTTGAT TTGGCCTTGG AGTATTATGC ACAGTCTGCT GCTGCAATGG 
GTGGAGGAGA GGTATCATGG ATTGGTCGAG GGAATGCTGA TCAGCAGCGG 
CAGCGAAATC TAATGTTGAA GCAACTGCTG ACAGAGATAT TACTAAGGGA 
TGGTGGCATT CAACTTTTGC TTGGTCCAAG TGGAATGGGG GAAGAAGGAG 
AATTAAAGAA GTATATGATG GATTGGAGAA GCAGGCAGCA ATTCTTACTT 
GAAGCTGCCC ATCAGTGTCA TGAGGCAGGC CTCTATGACA AATCAGTGGA 
AATTCATAAA AGAGTTGGAG CTTTTGCCAT GGCACTTCAG ACAATAAATA 
AGTGCCTGTC GGATGCAATA TGTGCCATGG CACGCAGTAT GTTAGATGGT 
GAAAGTCGTG CTGCTGCTCT AATTCATTCT GGTAATGAAA TTATGGAAAC 
TGCCAGATAT TCGGAAGCCA GTGTTCAAGA CAAGGACCTC ATATCTGAGC 
AACAAACTGT ACTGAGACAG CTTGAAGCTA TTCTCCATAT CTATAGGCTT 
GCTCGAGCTG GACAGACTTT AGATGCTTTG AGGGAAACCA TCAAACTCCC 
ATTTCTTCAT TTGGATCCTC AGGCTCCAAA TGTGACAGTT GATGTGTTCA 
GAAACTTGTC ACCGCATGTT CAAGCTTGTG TGCCAGATCT CTTGAAGGTT 
GCTCTAAATT GTATGGACAA TGTTAGAGAT ACTGATGGGA CCTTGCGTGC 
AGTCAAGTCA AAGATCGCAA ACCTCGTGGC AAGCAACATG AGCAGGAACT 
GGCCACAGGA TTTGTATCAG AAGGTGGCGC AGTGCATATG ATGGGGATCT 
GTCCGGCCAT ATACCTGACA CTATCAAAAG CTTCCGAAAG CACGCGGAAA 
TGCTTTTCTG TGTTTGTGCT GGTGATGTGC TTATGGTCCG AACCGGAATG 
TTTCAGACTG GTGGATGCAA ATCCTTTTGA TCACTCAGCT ATATCAGCCA 
AAAGAGAACA TATATGCCAT GCCCGGGGGT CATCTGATGT GTAGTGTGTG 
AAATGTGAAA CTTAATGGCA CCAATCAGAA TCTGTATTAT TAATCCATGG 
TTGTAAAGCA GTTTCTGAAT ATCCAAATGC ACTGTTGCTT AGTTCGAGGA 
GATTATCTGC GGCTCTATTG TACTGTCATT CTGTTGGCTT ATCCCACTTA 
ATCCCGCGTC CTATCTCGGA TCT

Gene models with high sequence identity

AT2G41620.1 [+] show detail - Nucleoporin interacting component (Nup93/Nic96-like) family protein
E-value: 0; Score: 999.99

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Nucleoporin interacting component Nup93/Nic96	1.4e-126
HMMPanther	Nucleoporin interacting component Nup93/Nic96	4.7e-59
superfamily	vWA-like	1e-07

See the detailed result >

AT2G41620.1

Model type: Protein coding
Short Description: Nucleoporin interacting component (Nup93/Nic96-like) family protein
Computational Description: Nucleoporin interacting component (Nup93/Nic96-like) family protein; FUNCTIONS IN: protein binding; INVOLVED IN: transport; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin interacting component Nup93/Nic96 (InterPro:IPR007231); BEST Arabidopsis thaliana protein match is: Nucleoporin interacting component (Nup93/Nic96-like) family protein (TAIR:AT3G57350.1); Has 357 Blast hits to 350 proteins in 149 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 130; Plants - 48; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link: InterPro Scan - TAIR