K31608

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31608

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31608

Determination of introduced cDNA(s)

  • J033125C05 - Rice Full-length cDNAs - Original: J033125C05

    full reading [+] show sequence

    Nucleotide sequence: J033125C05 - full reading 
    GGACCACTGC TTCCTCCCAC CTGCGGAGAC GGAACCCTAA AAAATTTCTT 
    CTTCCCCTTC TCGTCCGGGC AGCGGAAGGA GCTCTAAGCC AGAAGAAGCA 
    TCATGCCTAA GATAAAAACA AGTGGTGTGA AATATCCCGA TGGGTGGGAG 
    CTTATAGAAC CCACCCTCTC AGAGCTCCAT TCCAAGATGA GAGAAGCTGA 
    GAATGATCCG CATGATGGGA GAAGGAAGTG CGAGGCACTG TGGCCCATCT 
    TCAAGATCAA TCACCAGAGG AGCCGATATC TTTATGACCT ATACTACAAC 
    AGGAAGGAGA TATCCCAGGA GTTGTATGAG TTCTGCCTTG ACCAGGGACA 
    TGCTGACCGT AACCTCATCG CCAAATGGAA GAAGCAAGGC TATGAGCGTC 
    TCTGCTGCCT GCGCTGTATC CAGACACGAG ACCACAACTT TGCGACCACC 
    TGTGTTTGCA GGGTTCCTAA GCACCTAAGG GAAGAACAGG TGATAGAGTG 
    TGTCCACTGT GGTTGCAAAG GTTGTGCTAG TGGTGACTAA GTATCCACTA 
    TTGGGATTAC TTTTCAAGTT ACATCAGGAG CAAGTTGATG AATGTAAACT 
    GAATAACTGA TGTAGTGATA TCTCTGATGT ACTTGGAAAA ATGCCTAGCC 
    TGTCTAGAGA GTAGACTGAA TGTACTCGTA AGATGATGGA TGTGGTAATG 
    TGAAAAAAAC TTGAGTTCTT CTACC

    Gene models with high sequence identity

    1. AT4G21110.1 [+] show detail - G10 family protein
      E-value: 1e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan BUD31/G10-related, conserved site 0
    PatternScan BUD31/G10-related, conserved site 0
    FPrintScan G10 protein 2.3e-59
    FPrintScan G10 protein 2.3e-59
    FPrintScan G10 protein 2.3e-59
    FPrintScan G10 protein 2.3e-59
    FPrintScan G10 protein 2.3e-59
    HMMPanther G10 protein 3.2e-91
    HMMPfam G10 protein 4.1e-61

    See the detailed result >

    AT4G21110.1

    Model type
    Protein coding
    Short Description
    G10 family protein
    Computational Description
    G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR