K31621

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31621

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31621

Determination of introduced cDNA(s)

  • J033098D23 - Rice Full-length cDNAs - Original: J033098D23

    full reading [+] show sequence

    Nucleotide sequence: J033098D23 - full reading 
    GAGATATCCA ATCCCCAAAG CCTCCACTAA AGTAGTACTA GTATTCTAGA 
    AGCTTCGGAT GGAGCGCCGC CACCGTCCTC GCGCCGCCGC CGCCGCCGCC 
    GCTTCTGCCT CCGTCTCCGC CGCCGCCCAC CACCCGGGGG GAGTGCGTGT 
    ACATCCCTAC CATACGTCGG CAGGGGTGGT GAAGGGGAAG CTCCACACCC 
    GCAAGGCCGC GACGACGTAG TACTACCACG TCAGTTCGAA CAACTCCATC 
    CAGGAGGTTC ATCAAGGAGT AGTTGGGGGT CAGATTCCAA GGATTGGTTG 
    GCAGATTGAT CCAATTTCGC ACTCTGCAAT TCAGGATTAC TGCCTAGGAA 
    TTGATGATTT TTTTTCTCGG GGTTGATTAC CAAGATAGTG ATACGCGGAA 
    AGGGAACAGA AGAACTCGAG GTTGTGAGAG GGGCTCCAAG ACTCTCGGCT 
    CGTCAGCTGA TTTAAGCAAA TATTATGACG ACAAACCATG CCATGATTAC 
    AATGGATACA GACTTCAAAA TTCAATTATG ATTTATCATT ATGGATAAAG 
    TTGGTTCAGA ATGATGGACA AACTAATTCA TTATGTCAAT AAGGTTAAAG 
    ATGATCATTA ATATTACTAA TACTGACTAT TGTTTAGTTT CTTTGTTTTG 
    GTTTCACCAT GAAGTTGCAG TCATGGCATT ACATAATGCA GATATCTTGA 
    ACTTGTGATA TGATGATTTC AACGTGTTTA TTCCATTCCC TTAATTGGCC 
    ATGCCAATGC TCTCTATTCC ATGTCTTCCA TTTATACTGA TGCAAAATAT 
    GCTTAAATGA GCCATGGCCT CTCAAGACAA ATGATTTCTA CCTGTATGTT 
    CTATTTTCAT ATTCATAATT GGTATGGGTA ATTTCACTTT GTTTCTTTCA 
    CATGCATTTG ACTGTATTTC TTACACCTGG TATGCGGACA ACCCGAATGC 
    CTGGACTGGT TCCTTCACAA GAAGACCTTC CTTAAAACAA CAGTCCGTGC 
    TATGATTGGT GGTTTTACCA CCCTTTTCAT TATTCTGGCT TTCACATGTC 
    CAATTTAAAT GTGATATATT TTCTTGTTCC CTTGGTACTT TGTGGTGCCA 
    TATGCTTAAT ATCTTATTTC TTTTCACTTT TCAGGCATCT TGGCTTCTGG 
    AATTCTTTTA AGGGGAAAGC AAATTAAATC TCACAACAGA TACTTTAGCT 
    GATGCTCTAG CTCTTGCTCA GCACCATGAT GCTGTTACAG GAACAGAGAA 
    GCAACATATC ACAAATGACT ATGCGATGAG ATTATCAATT GGCTATACAC 
    AAGTGAGCTC TCAAGAATAT TCTTATTCAT ATTTGATGTC TTCCTTTGGG 
    ATTTGATCTC TTCAATGAGT CAGGCTCAAA ATAGCGTGTC CATCCCAAAC 
    AACAAAAATT GGTCAGTGCC TGCTCTGTAC ATCCCCATGG ATTAGCAGGA 
    GGAAGAAGAA GGAAGAGGCA GAGAAGAACA GCTAATTCCC TCATTCATTG 
    CTTAACAGCG TATATGTGGC TTCAACTGAC AAGTATGAAA GATTGGATGC 
    ATCAGGCTGC CCTCTGGATG TTGTAATTTG TATGCATTTG GACCATTTCG 
    AGCAAGAACA TCATAGGGGC CGAGAATTTA TAGACCCACT TAAGATATGA 
    CATATTGACA ACTGAAGATT GAGTATAAGG TTGCAGCTTG CCAGCCTCAG 
    ATATACACTG GCGATTCAGT ATAAGGTTGC AGCTTCAGAT ATTCTTTGTC 
    ACCCACAGGA AACTCCAGCA GATATGTGCT TTTATCAGCA ATATTCTTCA 
    TTCTCAAATG TTCTCTAGCC AACTGATTCT TCAAAAATTC AGAATAAGCA 
    GCCCTTGTTG TCAGCATATC AGTGGCTTCA TTATCAGCTG AAGCAACTAG 
    GTTCAGTGCC AAACAATGTC TTGTGAGGGG AGCTACCCAA GGCTGTGGAT 
    GGAGTGCGGT ACTAGGTTCA ATTGAGTATC AAGCTTCGCA AGCAAGTCGT 
    TCCAAAATTA CTGTATATCC CTCAATGTGA GGCAAGCCCT CTATAAAATT 
    CATGGATAAA TCTTACCAAG CAGTGAAGAA CCTTCAGTGA CTGGTGGAAG 
    GGTGAGAAGT CCAGGTAAGG ACTCCATTCA TCAACAGACA ACATGACAGT 
    GAGGAATCCT TTACCATAAA TGAAAATCTT CTGATTTTGT GGGCTAAAGG 
    CTGTTCAATT AAGCCACTGG ATGACCATTT TGACTCAGCG CAAAGGTTGA 
    CCGTTGGATT TGCCACTGGG AATTCATGCT GCCTTGTCCT GGAGAAGGCA 
    TGATATCACG CTGTCCCCAT TCCACAATGC CTTTTGGCGG TGCTTTCCAG 
    CCCAGATTGG TCGATTCTGC ACAGTGAGAA GTAATCAAGT AAAGATGTGG 
    TGCAGGCCAT GAAATGTACA AACAGGAAGA CAGATAAATA TATTGAGGCA 
    TAATTGCGTC GAACTCTCAG CTTTTCTGAG ATTATATTAA GTAAATTTTC 
    TCACCTCTTT TGCCGTGGAT AACCTTCTGT GAGTGTCAGA TCAGAAATCA 
    GTTGTGTTCA GATGAAATCT GCTTCATGTA AACTCAGGCA TGAGACTGTA 
    GCATATGCAT TCTCTAGCAA AAGCCTATTA TTAGCCTTAG ATGGCAGGAT 
    TTTTGCTTAT TTTCTATGTT TTCTTATCTC TCTTACGTGT TTCTTTTGTG 
    TTCTCTCTTT TATATTATTC TTGAATCTTG ACTTCTCTTA AAAGTCTGGC

    Gene models with high sequence identity

    1. AT5G13980.3 [+] show detail - Glycosyl hydrolase family 38 protein
      E-value: 5e-08; Score: 57.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 38, central domain 6.9e-10
    HMMPanther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH 6.6e-16
    HMMPanther ALPHA-MANNOSIDASE 6.6e-16
    superfamily Families 57/38 glycoside transferase middle d 1.7e-10
    Gene3D no description 5.8e-12

    See the detailed result >

    AT5G13980.3

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family 38 protein
    Computational Description
    Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 1157 Blast hits to 1109 proteins in 192 species: Archae - 7; Bacteria - 147; Metazoa - 691; Fungi - 22; Plants - 155; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR