K31624

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31624

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31624

Determination of introduced cDNA(s)

  • J013099J01 - Rice Full-length cDNAs - Original: J013099J01

    full reading [+] show sequence

    Nucleotide sequence: J013099J01 - full reading 
    GATAGTACTC GCACGACGCG ACGCCTCTGC TGAACATTTC GCTCTCTTCC 
    AAGATATTTT TTCCTCCCAC GATTCCTTCC TCCCATCCCT GGGGGATTCA 
    TCGGCTCATC CGTACTAGCA CAAGATGTGC GAGGGTGTGC GGGCCGCCGG 
    CGACGCCGCC GCCGCCGCCG ACGTCGACGT CATCACCTCC TCCGGCCGCC 
    GGAGGATCCC CGCGCATTCC ACTGTTCTTG CGTCGGCGTC GCCGGTGCTG 
    GAGAGCATCC TGCAGCGCCG CCTGAAGAAG GAGAGGGACG CCGCCGCCGG 
    CGGCGGCAAG GTCCGCAGGG CCGTCGTCCT GATCCGCGGC GTCACCGACG 
    ACGCCGCGGC CGCCTTCGTC CGCCTCCTCT ACGCCGGCAG CAGTGGTGAT 
    GAGGAGGAGA TTGACGAGAA GAGCGCGGCG CAGATGCTGG TGCTGGCGCA 
    CGCGTACCGG GTGCCGTGGC TGAAGCGGCG GTGCGAGGGG GCGATCGGGT 
    CGCGGCTCAC GGCGGAGTCG GTGGTGGACA CGATGCAGCT GGCGGCGCTG 
    TGCGACGCGC CGCAGCTGCA CCTGCGCTGC ACCAGGCTGC TCGCCAAGGA 
    GTTCAAGGCC GTGGAGAAGA CCGAGGCGTG GCGATTCCTC CAGGAGAACG 
    ACCCCTGGCT CGAGCTCGAC ATCCTCCAGC GCCTCCACGA CGCCGACCTG 
    CGGCGGAGGA AGTGGAGGAG GAAGAGGGCG GAGCAAGGGG TCTACGTGGA 
    GCTGAGCGAG GCGATGGACT GCCTGAGCCA CATCTGCACG GAGGGGTGCA 
    CGGAGGTCGG GCCGGTGGGG CGTGCGCCGG CGGCGGCGCC GTGCCCGGCG 
    TACGCGACGG CGTGCCGGGG ACTGCAGCTG CTGATCCGCC ACTTCTCCCG 
    GTGCCACCGC ACCAGCTGCC CGCGCTGCCA GCGCATGTGG CAGCTGCTCC 
    GCCTCCACGC CGCCCTCTGC GACCTCCCCG ACGGCCACTG CAACACCCCT 
    CTCTGCATGC AGTTCAGGAG AAAGGAGGAG GAGAAGGCGG CAGCGAAGGC 
    GAAGGCAAAG GCCGGCGATG ATGACGATAA GTGGGGGCTT CTGGTGAAGA 
    AGGTGAGGGT TGCCAGGGCC ATGTCTTCTC TGGGCAAGAG GAGGCAGATG 
    AGTTGCTCCC AGTGCTGAGC AAGTGCAATC ACAGCATCAG CCTGAGACAG 
    TCAAGAGAAG AGTATTGTAG TATAGAAGGG TACTACTATG TAGTTAGGCA 
    TAGTGCATGA GTGTATTGAA GTGAGCTATT TTTTGGTTTG TTCAAGATGG 
    TTTGGTCTCT CAAGTTTGAG TTGCTTTACT GTCTTCAATT TGTAGAGTTC 
    TTTTGTGAGG TGAGAGAAAT GGGCTGAAAT CTGTTGTAAA ATTGCCTATA 
    TCGTAAATAA ACTTTTAATA GTGAGGTATA TGATCATTAC AGTTTC

    Gene models with high sequence identity

    1. AT5G63160.1 [+] show detail - BTB and TAZ domain protein 1
      E-value: 3e-65; Score: 246.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam BTB/POZ 0.000000076
    HMMPfam Zinc finger, TAZ-type 0.0000018
    superfamily Zinc finger, TAZ-type 2.9e-18
    superfamily BTB/POZ fold 0.0000000019
    HMMSmart BTB/POZ-like 0.0000018
    HMMSmart Zinc finger, TAZ-type 0.00000000011
    HMMPanther Kelch related 0.000000000000025
    ProfileScan BTB/POZ-like 10.737
    Gene3D BTB/POZ fold 0.0000073
    Gene3D Zinc finger, TAZ-type 0.00000000046

    See the detailed result >

    AT5G63160.1

    Model type
    Protein coding
    Short Description
    BTB and TAZ domain protein 1
    Curator Summary
    BTB and TAZ domain protein. Short-lived nuclear-cytoplasmic protein targeted for degradation by the 26S proteosome pathway. Acts redundantly with BT2 and BT3 during female gametophyte development.
    Computational Description
    BTB and TAZ domain protein 1 (BT1); CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB and TAZ domain protein 2 (TAIR:AT3G48360.1); Has 1462 Blast hits to 1460 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 839; Fungi - 0; Plants - 555; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR