K31633

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31633

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31633

Determination of introduced cDNA(s)

  • J023096O12 - Rice Full-length cDNAs - Original: J023096O12

    full reading [+] show sequence

    Nucleotide sequence: J023096O12 - full reading 
    GGCCGGCCAA ACTGCGGCCT CCAACACGCG CCGGCGGGCG GAGGCTCGCG 
    GCAGATGCGC CCGGCAGGTC AGGCCGCCGC CGTAGCCCGT AGATAGGGTG 
    CGCGCAGGAC GGAGCTGTTC GTGGAGGCCG TGGGGTATGC GCTCTTGAGA 
    TGTCTAATCT ATCAGAGCCC TCAAAAGAAG CTGTGTCAGC TGACGATTCA 
    AGTGCTGTCC AGAAAACTGG AGCATGGAGT AACACGTTGA ACATTCTTCT 
    GCAACAAACT TCAGTCTATG GTGTGGCTGC TGGTTATTGC CTGTCAGCAT 
    CTCTGCTCTC CATTATCAAC AAATGGGCAG TCATGAAATT TCCTTGCCCT 
    GGAGCATTGA CAGCTTTACA GTACTTCACT AGTGTTGTTG GAGTTCTCTT 
    ATGTGGACAA CTAAAGCTTA TTGAGCATGA TGGCCTTAAT TTGAGGACCA 
    TGTGGAAGTT CTTGCCTGCT GCTGTGATGT TCTACATCTC CATCTTCACA 
    AACAGTGAAC TTCTACTCCA TGCCAATGTG GACACTTTCA TCGTGTTTCG 
    CTCTGCTGTG CCAATTTTTG TGGCCATTGG AGAGACCTTT TATCTTCACC 
    AACCATGGCC ATCACTCAAG ACATGGCTTT CGCTTTCAAC TATACTTGGT 
    GGAAGTGTGA TCTATGTTTT CACAGACAAC CAGTTCACTG TGACTGCTTA 
    CACTTGGGCA GTGGCATATC TTGCAAGCAT GTCCATTGAC TTTGTCTACA 
    TCAAGCACGT TGTCATGACC ATTGGCCTGA ACACATGGGG CCTTGTGCTT 
    TACAACAATC TGGAAGCTTT CATGCTCTTC CCTCTTGAGA TGCTTCTAAC 
    GGGGGAGCTT AATCAGATGA AGGGCGACAA TGCTAAAGTG ACAAACTGGC 
    TTTCATCTGA TGTCATTCTT CCTGTTGCTC TGTCGTGCTT GTTCGGGCTA 
    TCTATATCCT TCTTCGGGTT CTCCTGCAGA CGGGCTATCT CGGCAACTGG 
    ATTTACCGTG CTCGGTATAG TGAACAAGCT CCTGACTGTT GTGATTAATC 
    TCCTTATCTG GGACAAGCAT GCCTCCTTTG TGGGAACAAT TGGGCTCTTG 
    ATCTGCATGT CCGGTAGTGT TCTCTACCAG CAGTCCACCA CAAAACCAAA 
    GGCCCCCAAG GCTGAGCCAA AAGAGGAGAA TGATGAGGAG CAGCAGAAGT 
    TGCTGGAGAT GCAGCAAGGG CATGAAAGCA GCTCAACTCA GAAGCAAACA 
    TCATCTTAAG CCTGGTAGAA AATTTGGCAT TGATATCTTA AGACAGCTTC 
    CCTGAACCAT TTGGGATGCT TGGGAAGGAT CATTTGGCCA AAGGATATTC 
    ATTCGTTATA TGAGAACCTT GAAATGCCGT TGGCATGAAA AATCGCAGAG 
    AAAACTTAAT GTCACTTTGC AATTCTTTGT TTAGTAGTAT ACCGTATTTA 
    TTTGTTAGAC CTGTGGTAGG GTATCAATTA TCAAAGAATC CCGAAACATA 
    GTCGAACTGG ATTCTTCGTA TACAATGTGC TGTTTCATTG ATAATACAGG 
    GTGGTTACCC ATTTCTATAC AGGACGCGCC CGGCAGGGCA GGCCGCAGGC 
    GATAGCGTCG GCGTGCAGGA AACGAGGGTC ACGTACCCTG AGTCTCGGAC 
    TCCGTGAGGC TGTGGGCTAT ATATGCTCTT GAGATAACAG AGCTGGACAA 
    TCGAGGTATT TGGGTTTGCC TGCGGTGTTC ATCTTGCTGG TGATGGAGCC 
    ACTGAATCAG CCTTGCTAGA GCCCTTTAAG GTCATTGTAG GAAACGTTGA 
    ATTCGGAAAG GAAGTGAAGG TTCACCATTG CTGGAGGGAT TGCACCTGTC 
    AGATGGTTGT ATGACAGGTC TAGAACCATC AGGTTCTTGA GGTTGCTGAT 
    CGATTCTGGG ATCTCTCCAT TTAAGTTGTT GAAGCTCAAG TTGAGTGAAA 
    CAAGTTCTTT TAACTCACCA ATCTCCATGG GGATCACACC AGTGAAATTG 
    TTGTTACCTA GATTCAACAT TTCAGGGAGA GCAGTAGTTG TATGATACTG 
    CAAACACAAA CATGCACCCG CATAAAACGA AAATGTAAAT GCTCTTTGTT 
    CTGAGTTATC TGCAACCTTG TCTGACTTTA GCATTGGCAT CTCCATTAGT 
    GCCGCTGGTA TTTCTCCTGT AAGGCTATTA TTGGATACAT CCACATACTT 
    AAGGAAGTTA AGGCTATTGA TCCAGGTCGG TATTGGTCCA CTGAGTTGAT 
    TGCTGTATAA AGTTAAAACC TGCAAATTTC TGAGTTTTGA TAACCAATTA 
    GGTATCTTAC CATACAGTGC ACAACGCTCT ATGGCAAGAC CCTGAATATT 
    CTCAAAACCA TCAATTGCTT CATCCTGTGG CATAGCTTCA TTCTTGAAGT 
    TGCTCCCCAT AAACAAGACA GTGAGGTTCC TTAAGCTCTT GAGTATGTGA 
    AGGGTATTAG TTATGTTTGT AAAATTGTTG TAGGAAATAG ATAAGAAGGT 
    GATCGACTTA AGATTTCCTA TATTTTTTGA CAACTGGCCA TGAAGCCTAT 
    TGGCAGATAG GCGCAACC

    Gene models with high sequence identity

    1. AT1G76340.1 [+] show detail - golgi nucleotide sugar transporter 3
      E-value: 5e-130; Score: 462.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SOLUTE CARRIER FAMILY 35 2.1e-49
    HMMPanther RECEPTOR PROTEIN KINASE-RELATED 5.2e-59
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.2e-59
    superfamily Multidrug resistance efflux transporter EmrE 0.0009
    superfamily L domain-like 2.5e-48
    HMMPfam Protein of unknown function DUF250 1.8e-06
    HMMPfam Leucine-rich repeat 1
    HMMPfam Leucine-rich repeat 0.31
    HMMPfam Leucine-rich repeat 0.045
    HMMPfam Leucine-rich repeat 0.048
    Gene3D no description 2.8e-47
    FPrintScan Toll-like receptor, leucine rich repeat-containing 1.3e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 1.3e-05

    See the detailed result >

    AT1G76340.1

    Model type
    Protein coding
    Short Description
    golgi nucleotide sugar transporter 3
    Curator Summary
    Encodes a nucleotide-sugar transporter.
    Computational Description
    golgi nucleotide sugar transporter 3 (GONST3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 4 (TAIR:AT5G19980.1); Has 1377 Blast hits to 1372 proteins in 233 species: Archae - 0; Bacteria - 8; Metazoa - 324; Fungi - 246; Plants - 675; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR