K31703

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31703

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31703

Determination of introduced cDNA(s)

  • J023083A08 - Rice Full-length cDNAs - Original: J023083A08

    full reading [+] show sequence

    Nucleotide sequence: J023083A08 - full reading 
    GAGGGGCTCT TCTCCCTCGC CCAGCCCAGG GCGTACGTCG CGCTCAACGA 
    CCCCGCCGCC GCCGAGGCCG ACATCACCGC GCTCGTCGAC GCCATCGCGC 
    TCGGCCTCTT CTGCGTCGTT GCCACGCTCG GCGCCGTGCC CGTCATCAGG 
    TGCGCTGGCG GCGGGCCGGC GGAGATGGTC GCCGCCGCGC TTGACGCCCG 
    CCTCCGCGAT CACCTCATCG CCAAGCCCAA TCTCTTCACT GAGGCCGCGT 
    CCACAGCAGT TGCATCCTTC CAGCGGCCAC TCCTGTGCCT GTTTGATAGG 
    AATTTCGAGC TTTCGGTGGG GATCCAGCAT GATTGGAGCT ACCGCCCGTT 
    GGTCCACGAC GTGCTCGGCC TGAAGTCGAA CAAATTGAAG TTGCCAGAGA 
    AGTATGATTT GGATGACACT GATCCGTTCT GGGTGGCAAA CAGCTGGTTG 
    CAATTCCCCA AAGTGGCAGA GGAAATTGAG GCCCAGCTTG CCAAGTACAA 
    GCAGGATGTG GATGAGGTGA ACCAGCGCAC AGGTGGTGGC AGGGATGGTG 
    TTGAGTTTGA TGGCACCGAT CTCATTGGCA ACACCAGGCA TCTCATGAAT 
    GCTGTGAACT CGCTCCCAGA ATTGACGGAA CGGAAGAAGA TGATTGACAA 
    GCACACGAAT ATTGCAACGG CGCTGCTTGG CCATATCAAG GGGAGGTCTC 
    TGGATGGATA TTTCGAGTGT GAGAATAGTA TGCTCGTGGA TGGCACCTTG 
    GACCGGACCA AGTTGATGAA CCTGCTGAGA GGGAACGGCA CCAAGGAGGA 
    TAAGCTCCGA CTGGCTGTGA CCTACCTGCT TTCCTTCGAG ACACCAGTGC 
    CATCTGACTT AGAGCAGGTT GAGGCCGCTC TGCGTGAGTC AGAAGTGGAC 
    ATGTCCGCGT TTCAGTATGT AAAGAGAATA AAGTCACTGA ATTCCCAGTT 
    CGCTGGTGCA TCAAACACCG CAAGCAAGGT TAACATAGTT GATTGGGCAG 
    AAAAGCTTTA TGGGCACTCC ATTAGTGCCA TGACAGGTGT GAGGAATTTG 
    TTATCAGATG GAAAGCAGCT GGCCGCTACA AGGGCTGTAG AAGCTTTGAT 
    GGAGGGGAAA CCAAATCCTG AAGTTGACAA CTACTTACTA TTTGATCCAC 
    GGGCCCCTAA ATCAGGAACT GCTGGACAGT TCAGAGGACC CTTCAGAGAG 
    GCCATTGTTT TCATGATTGG TGGTGGAAAT TACATTGAAT ACAGGAGCTT 
    GACAGAGCTA ACGCAACGTT CACAGACTAC CAAGCAAGTC ATATATGGAG 
    CAACTGAAAT TCTTAATGGG GTGGAGTTTA TTCAGCAACT CTCAGAACTG 
    GGGCAGAAAG CAGGGTTGGG TGGTGTCAGC AGCAGCCTGC CACCCCAGTA 
    AACAGGCTCC TTCAAGATAT TTTGATGTTA ATGGGTGTTT AAAGCTTCCT 
    AGATCAGTGG TATCTTACCA GACTTTTGAT GTTAAAGAGT GGTCCAGACT 
    GCATAGATCA ATGGTATCCA ATTTCCAAAA AGCTCAGGTT TATGGCCTTG 
    CTTTGAATGT CATCTATACA AAGTTTTCTT ATGATTTT

    Gene models with high sequence identity

    1. AT2G17980.1 [+] show detail - Sec1/munc18-like (SM) proteins superfamily
      E-value: 2e-166; Score: 582.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SLY1-RELATED 3.9e-187
    HMMPanther Sec1-like protein 3.9e-187
    Coil coiled-coil 0
    Gene3D no description 3e-61
    HMMPfam Sec1-like protein 5.7e-92
    superfamily Sec1-like protein 1.4e-101

    See the detailed result >

    AT2G17980.1

    Model type
    Protein coding
    Short Description
    Sec1/munc18-like (SM) proteins superfamily
    Curator Summary
    member of SLY1 Gene Family
    Computational Description
    ATSLY1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: protein secretion, vesicle-mediated transport, vesicle docking involved in exocytosis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: Sec1/munc18-like (SM) proteins superfamily (TAIR:AT4G31740.1); Has 1583 Blast hits to 1569 proteins in 233 species: Archae - 0; Bacteria - 15; Metazoa - 661; Fungi - 409; Plants - 204; Viruses - 0; Other Eukaryotes - 294 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR