K31709

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) desaturated green (PATO:0001272) (Stem::Color::pale) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31709

Determination of introduced cDNA(s)

J033087I04 - Rice Full-length cDNAs - Original: J033087I04

full reading [+] show sequence

GGTCCCCGGC CCGGCCCGTG CCTCCCCCAG TCCTCCTCTC CCCCGTCTCC 
CGCCGCCTAG CGATTCCCGG AGCGCCTCCT CCGCCACCCA TCCTGCTCCA 
ATGGCGCTTC CTTACCTGGA GGCCGTGCTG TGCTTTATGA TTCTCATGTA 
TATATTTGAG ACATATCTTG ACATCCGTCA GCATAGAGCC CTTAAGTTGC 
CAACACTGCC AAAACCCCTG GTAGGAGTAA TTAGTGGTGA AAAGTTTGAG 
CGCTCCAGAG CTTATAGCCT TGATAAAAGC AAATTCCATT TTATCCATGA 
AGCTGTAACT ATATTAATGG ATACCACAAT TCTGTACTAT AGAGTTCTTC 
CCTGGGTTTG GAAGAAATCT GGAGAGCTAG CAACCAATGC TGGCCTAAAT 
GCTGAAAATG AGATACTACA CACTCTTGCA TTCTTAGCAG GTGTCATGAT 
TTGGTCACAG ATCACAGACT TACCATTCTC TCTTTATTCA ACATTTGTTA 
TTGAAGCTAA ACATGGTTTT AACAAGCAAA CTATTTGGCT CTTCATTAGG 
GACATGGTCA AAGGGATTTT GCTATCGATC TTACTTGGAC CTCCTATTGT 
GGCTGCTATT ATCATCATAG TACAGAATGG AGGGCCCTAC CTGGCAATAT 
ATCTATGGGG TTTTATGTTT GCATTATCTC TTGTGATGAT GGCAATATAC 
CCCATCGTGA TAGCACCTCT GTTCAACAAA TTCACTCCGC TTCCAGAAGG 
AGTACTCAGA GAGAAAATAG AGAAATTAGC AGCTTCACTC AGTTTTCCAT 
TGAAAAAGCT TTTCGTGGTG GATGGGTCTA CCAGATCAAG CCACAGTAAT 
GCTTACATGT ATGGGTTTTT CAAGAACAAG CGCATTGTTC TCTATGACAC 
GTTGATTCAG CAGTGTAGTA GTGAGGATGA AATAGTTTCT GTTATTGCAC 
ATGAACTTGG GCACTGGAAA CTCAACCACA CTGTGTATTC CTTTGTAGCT 
GTCCAGCTCC TTATGTTCCT ACAATTTGGA GGATATACGC TAGTAAGGAA 
CTCCAAAGAC CTTTTTGAAA GTTTTGGTTT CGAGGATCAG CCTGTAATAA 
TTGGGCTGAT CATATTTCAG CACACTATAA TACCTGTCCA GCACCTTCTG 
AGTTTTTGTC TGAACCTTGT CAGTCGGGCA TTTGAATTTC AGGCTGATGC 
TTTTGCCAAG AACCTTGGGT ATGCTCCTCA GCTCCGTGCA GCCCTTGTTA 
AACTACAGGA AGAGAACTTA TCTGCAATGA ACACAGATCC GTGGTATTCA 
GCCTACCACT ACTCCCATCC ACCCCTTGTT GAAAGGCTCT CTGCTCTTGA 
AGACGCAGAC AGCAAAAAGG AAAACTAACG GAAAGTTGAT CCACCTGAAA 
CACCGAAGTC TTTACTCTTC CATGGGTTAC CTTACGGTGT CATGGAATCG 
TTTCAATGTT CGGGATGTTA ATGGAATGTG TGAGTACATG AGAAGTACTG 
TAAGCGTTCA AACATTTATC ATACAGGGGA ACGTTGGCAA CTATGTAGCT 
CTCGATTAAG ATAGTTTGCC TTCCATTAAT TGGCTTACAG ATATTGACAT 
ATACTCCTTC CATTTCACAA TGTAAGTTAT TCTAGCATTT TCCACATTCA 
TATTGATGTA TTAATATGAA TGTGGGAAAT GCTAGAATGA CTTGCATTGT 
AAAACGGAGG AAGTACATGT CAGTGTATTC TCCTACTACT TTCGACAAGA 
AATAGAAGTG AATCAGCT

Gene models with high sequence identity

AT4G01320.1 [+] show detail - Peptidase family M48 family protein
E-value: 0; Score: 664.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	CAAX PRENYL PROTEASE STE24	4.1e-211
HMMPanther	CAAX PRENYL PROTEASE STE24	4.1e-211
HMMPfam	Peptidase M48	1.8e-59

See the detailed result >

AT4G01320.1

Model type: Protein coding
Short Description: Peptidase family M48 family protein
Curator Summary: CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.
Computational Description: ATSTE24; FUNCTIONS IN: endopeptidase activity, metalloendopeptidase activity; INVOLVED IN: CAAX-box protein maturation, proteolysis; LOCATED IN: endoplasmic reticulum, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M48 (InterPro:IPR001915); Has 2991 Blast hits to 2984 proteins in 996 species: Archae - 162; Bacteria - 1572; Metazoa - 206; Fungi - 172; Plants - 49; Viruses - 0; Other Eukaryotes - 830 (source: NCBI BLink).
Link: InterPro Scan - TAIR