K31712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31712

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31712

Determination of introduced cDNA(s)

  • J013116O09 - Rice Full-length cDNAs - Original: J013116O09

    full reading [+] show sequence

    Nucleotide sequence: J013116O09 - full reading 
    GGTTTCTCTC TCCTGCTCCC CCCCCAACGC CGCCGCCACC GCCGCCGCCG 
    CCGCCGCCGA ATCCGAGACC CCCATCTCGG ATTCACCTCT CCCGCCTCCG 
    GCCTCCGTCA CCGTCTCCCC ACGCGCGTCA GTCATGGCGG GAATGGCACC 
    AGAGGGATCC CAGTTTGATG CTAAGCACTA TGATTCTAAA ATGCAGGAGC 
    TTCTGAACCA AGGTGAAACC GAGGAGTTCT TCACATCTTA TGATGAAGTT 
    CATGAGAGTT TTGATGACAT GGGTCTCCAA GAGAACCTTC TCAGAGGCAT 
    CTATGCCTAT GGTTTCGAGA AGCCTTCAGC CATTCAGCAA AGGGGTATTG 
    TCCCTTTCTG CAAGGGTCTT GATGTGATTC AGCAAGCTCA GTCAGGAACA 
    GGAAAGACTG CCACCTTCTG TTCTGGAATT TTGCAGCAAC TTGACTATGC 
    TGTGGTTGAG TGCCAGGCCT TGGTCCTTGC TCCTACTCGT GAGCTTGCAC 
    AGCAAATTGA GAAAGTCATG CGCGCACTTG GTGACTATCT GGGTGTGAAG 
    GTTCATGCTT GTGTTGGAGG TACTTCTGTT CGTGAGGACC AAAGGATTCT 
    TGCAAGTGGA GTGCATGTTG TTGTTGGAAC ACCTGGTCGT GTGTTTGACA 
    TGCTGCGTAG GCAGTCCCTC CGTCCTGATT ACATCAAGAT GTTTGTCCTT 
    GATGAAGCTG ATGAAATGCT TTCTCGTGGT TTCAAGGATC AGATTTATGA 
    TATCTTCCAG CTCCTCCCGT CAAAGATCCA AGTTGGTGTG TTCTCTGCTA 
    CAATGCCCCC TGAGGCCCTT GAGATCACCC GTAAATTCAT GAACAAGCCT 
    GTGCGGATCC TTGTGAAGAG GGATGAGCTC ACTCTTGAGG GTATCAAACA 
    GTTTTATGTC AATGTGGAGA AGGAAGAATG GAAGCTTGAC ACACTCTGTG 
    ACCTGTATGA GACACTGGCC ATCACGCAGA GTGTCATCTT TGTGAACACC 
    CGCCGCAAGG TGGACTGGCT CACTGATAAG ATGAGGGGCA GGGATCACAC 
    AGTTTCTGCT ACCCATGGTG ACATGGACCA GAACACTAGG GACATCATCA 
    TGAGGGAGTT CCGATCTGGT TCTTCCCGTG TGCTCATTAC CACGGACCTT 
    CTTGCCCGTG GTATTGATGT CCAGCAGGTG TCCCTTGTCA TCAACTATGA 
    TCTGCCGACC CAACCTGAGA ACTACCTGCA TCGCATTGGT CGTAGTGGTC 
    GTTTTGGTAG GAAAGGTGTT GCCATTAACT TTGTGACCCG TGACGATGAG 
    AGGATGCTGT TTGACATCCA GAGGTTCTAC AATGTGGTGA TTGAGGAGCT 
    GCCGGCCAAC GTCGCTGACC TTCTGTGATC AAGTTCAGAA GAGTTATGTT 
    AAGGGGCCTG ATAAGGATTG TTTTTGTCTG AAGTATCACT GTCTTATCTG 
    GGGGGGGGGG GGAGTGATAA AGGTGGGGGT TCTGTTTTAA AAGTCACTGT 
    GGTCGTAGAC AATTTCCAAA TTTTTATGCC ATGTTATGGG AATTTTTGTA 
    GTTGCTAGGC TGTGCTATGT GCTGGTGAGG AGGGAGGAGT CTTTTACTTT 
    TATTATATCT ATTGTTAAAA CTATGTATGA CCGAATGATG TTATTTATTT 
    GTGTCATGGT TGACTATTTG CC

    Gene models with high sequence identity

    1. AT3G13920.1 [+] show detail - eukaryotic translation initiation factor 4A1
      E-value: 0; Score: 754.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DEAD-like helicase, N-terminal 3.1e-56
    HMMSmart DNA/RNA helicase, C-terminal 4.1e-31
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 29.025
    ProfileScan DNA/RNA helicase, C-terminal 25.656
    ProfileScan RNA helicase, DEAD-box type, Q motif 10.921
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 8.9e-43
    HMMPfam DNA/RNA helicase, C-terminal 3e-25
    superfamily P-loop containing nucleoside triphosphate hyd 4.4e-58
    superfamily P-loop containing nucleoside triphosphate hyd 7.4e-49
    HMMPanther EUKARYOTIC INITIATION FACTOR 4A 1e-303
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1e-303
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    Gene3D no description 3.8e-69
    Gene3D no description 3e-51

    See the detailed result >

    AT3G13920.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 4A1
    Curator Summary
    eukaryotic translation initiation factor 4A-1
    Computational Description
    eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49714 Blast hits to 49117 proteins in 3142 species: Archae - 779; Bacteria - 27442; Metazoa - 6117; Fungi - 4773; Plants - 2624; Viruses - 17; Other Eukaryotes - 7962 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR