K31712

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31712

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31712

Determination of introduced cDNA(s)

  • J013116O09 - Rice Full-length cDNAs - Original: J013116O09

    full reading [+] show sequence

    Nucleotide sequence: J013116O09 - full reading
    GGTTTCTCTC TCCTGCTCCC CCCCCAACGC CGCCGCCACC GCCGCCGCCG 
    CCGCCGCCGA ATCCGAGACC CCCATCTCGG ATTCACCTCT CCCGCCTCCG
    GCCTCCGTCA CCGTCTCCCC ACGCGCGTCA GTCATGGCGG GAATGGCACC
    AGAGGGATCC CAGTTTGATG CTAAGCACTA TGATTCTAAA ATGCAGGAGC
    TTCTGAACCA AGGTGAAACC GAGGAGTTCT TCACATCTTA TGATGAAGTT
    CATGAGAGTT TTGATGACAT GGGTCTCCAA GAGAACCTTC TCAGAGGCAT
    CTATGCCTAT GGTTTCGAGA AGCCTTCAGC CATTCAGCAA AGGGGTATTG
    TCCCTTTCTG CAAGGGTCTT GATGTGATTC AGCAAGCTCA GTCAGGAACA
    GGAAAGACTG CCACCTTCTG TTCTGGAATT TTGCAGCAAC TTGACTATGC
    TGTGGTTGAG TGCCAGGCCT TGGTCCTTGC TCCTACTCGT GAGCTTGCAC
    AGCAAATTGA GAAAGTCATG CGCGCACTTG GTGACTATCT GGGTGTGAAG
    GTTCATGCTT GTGTTGGAGG TACTTCTGTT CGTGAGGACC AAAGGATTCT
    TGCAAGTGGA GTGCATGTTG TTGTTGGAAC ACCTGGTCGT GTGTTTGACA
    TGCTGCGTAG GCAGTCCCTC CGTCCTGATT ACATCAAGAT GTTTGTCCTT
    GATGAAGCTG ATGAAATGCT TTCTCGTGGT TTCAAGGATC AGATTTATGA
    TATCTTCCAG CTCCTCCCGT CAAAGATCCA AGTTGGTGTG TTCTCTGCTA
    CAATGCCCCC TGAGGCCCTT GAGATCACCC GTAAATTCAT GAACAAGCCT
    GTGCGGATCC TTGTGAAGAG GGATGAGCTC ACTCTTGAGG GTATCAAACA
    GTTTTATGTC AATGTGGAGA AGGAAGAATG GAAGCTTGAC ACACTCTGTG
    ACCTGTATGA GACACTGGCC ATCACGCAGA GTGTCATCTT TGTGAACACC
    CGCCGCAAGG TGGACTGGCT CACTGATAAG ATGAGGGGCA GGGATCACAC
    AGTTTCTGCT ACCCATGGTG ACATGGACCA GAACACTAGG GACATCATCA
    TGAGGGAGTT CCGATCTGGT TCTTCCCGTG TGCTCATTAC CACGGACCTT
    CTTGCCCGTG GTATTGATGT CCAGCAGGTG TCCCTTGTCA TCAACTATGA
    TCTGCCGACC CAACCTGAGA ACTACCTGCA TCGCATTGGT CGTAGTGGTC
    GTTTTGGTAG GAAAGGTGTT GCCATTAACT TTGTGACCCG TGACGATGAG
    AGGATGCTGT TTGACATCCA GAGGTTCTAC AATGTGGTGA TTGAGGAGCT
    GCCGGCCAAC GTCGCTGACC TTCTGTGATC AAGTTCAGAA GAGTTATGTT
    AAGGGGCCTG ATAAGGATTG TTTTTGTCTG AAGTATCACT GTCTTATCTG
    GGGGGGGGGG GGAGTGATAA AGGTGGGGGT TCTGTTTTAA AAGTCACTGT
    GGTCGTAGAC AATTTCCAAA TTTTTATGCC ATGTTATGGG AATTTTTGTA
    GTTGCTAGGC TGTGCTATGT GCTGGTGAGG AGGGAGGAGT CTTTTACTTT
    TATTATATCT ATTGTTAAAA CTATGTATGA CCGAATGATG TTATTTATTT
    GTGTCATGGT TGACTATTTG CC

    Gene models with high sequence identity

    1. AT3G13920.1 [+] show detail - eukaryotic translation initiation factor 4A1
      E-value: 0; Score: 754.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DEAD-like helicase, N-terminal 3.1e-56
    HMMSmart DNA/RNA helicase, C-terminal 4.1e-31
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 29.025
    ProfileScan DNA/RNA helicase, C-terminal 25.656
    ProfileScan RNA helicase, DEAD-box type, Q motif 10.921
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 8.9e-43
    HMMPfam DNA/RNA helicase, C-terminal 3e-25
    superfamily P-loop containing nucleoside triphosphate hyd 4.4e-58
    superfamily P-loop containing nucleoside triphosphate hyd 7.4e-49
    HMMPanther EUKARYOTIC INITIATION FACTOR 4A 1e-303
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1e-303
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    Gene3D no description 3.8e-69
    Gene3D no description 3e-51

    See the detailed result >

    AT3G13920.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 4A1
    Curator Summary
    eukaryotic translation initiation factor 4A-1
    Computational Description
    eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49714 Blast hits to 49117 proteins in 3142 species: Archae - 779; Bacteria - 27442; Metazoa - 6117; Fungi - 4773; Plants - 2624; Viruses - 17; Other Eukaryotes - 7962 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR