K31724

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31724

Determination of introduced cDNA(s)

J023138B10 - Rice Full-length cDNAs - Original: J023138B10

full reading [+] show sequence

GGTCGTCGTG TCCTCTCCTC GTTGATCGAT CTCGAGGAGT TCATCTTCTT 
CTTCCCCCTT CGCCTACTCG CCTCTCCTGC CGCAAATTCC AATTCCAATT 
CCAATCCCGC TTGGGCGAGC GATCCACCCT CTGCTTCGGC TGCCATGGCG 
ACCGACTCCT CCTCCTCCGC TGCCGCCGAT AAGAACACCG TCTTCCGCAA 
GCTCCGCGCC AAATCAGACA ACAAGATGTG CTTCGACTGC AACGCCAAGA 
ACCCGACCTG GGCCTCCGTC ACCTACGGCG TCTTCCTCTG CATCGACTGC 
TCTGCCGTCC ACCGTAGCCT CGGCGTTCAC GTCTCCTTCG TCAGGTCAAC 
AAATTTGGAT TCGTGGACCC CAGAACAATT GAAAATGATG GTTTATGGAG 
GTAACAACCG TGCACAAGCT TTCTTCAAGC AGCATGGTTG GACAGATGGT 
GGAAAAATTG AAGCAAAGTA TACTTCAGAG CTGCTGACTT ATACCGGCAG 
TTGCTCGCTA AGGATGTTGC TAAAAATTCC ACTGAAGATG GGAACAACAG 
TTGGCCGTCC TCCCCAGTTG CAGCTTCACA ACCTACAAAT CAAGCTGATG 
CAATTCCAGA TCTTAAGCTG GCAGAGGCAT CTAAAGAAGT TGCAAATGAG 
AAGACTGAGC CTGAGGTTAT TCGTTCACCA AGGGCTCCAA CTCATTCTTT 
CAAGAAGCCA ATTGTTGCGA AGAAGCCTGG AAATAAGACC GGTGGACTTG 
GTGCACGGAA ACTTACGTCA AAGCCAAATG AAAGTCTCTA TGAGCAGAAG 
CCTGAAGAGC TAGCTCCTGC GCTGCCACCA GTGACTGAGA ACAGTACAGC 
AAAGAGCAAA TCTCATACTT CACGATTTGA ATATGTGGAA AATACACCTT 
CTGCTGGGAG CAATTCAGAA GAAAACCAGG TCATTGGACA TGTTGCGCCC 
CCAAAATCTT CAAACTTCTT TGGCGAATTT GGGATGGACA GTGGATATCA 
CAAAAAATCT GCCCCTGGCC CATCCAAAGT GCAGATTGAA GAAAGTAGTG 
AAGCAAGACA GAAGTTTTCA AATGCAAAGT CAATTTCATC TTCTCAGTTT 
TTTGGAGACC AGGCCAGTTT TGAAAAGGAG GCTCAAGTTT CCCTCCAAAA 
GTTTTCGGGA TCTTCTGCCA TTTCAAGTGC TGATCTATTT GGTCATCCAA 
CCAATAGTTC CAACGTGGAT CTGAGTGCTT CAGATTTGAT CAACCGGCTT 
TCTTTCCAGG CTTCCCAGGA TCTGTCTTCT ATCAAGAACA TGGCTGGGGA 
AACTGGGAAG AAGTTGACAT CTTTGGCATC GAACATCATG TCTGATCTTC 
AAGACCGGAT CCTGTGAGTT CAATCTACAG TCGAGACTCC GTGACATTTC 
TTCAGCCGTT ACAGGATTCG CCGTGACAAT AAGTTGACGG CATGCCTGCT 
TGGCAGATAT GTTCAGGAGT TCCTATAACT TAAAACTTAA AGACCTGGAG 
CTATAGAGAA AATGTTATGT CGTGAATGCT GTACTGGCTA AAGTCATGTA 
AGCATATGCA CCTGTAACAA GAATGTTTTT TTCATAAAAT TGTTAAAACC 
GTCTTAGTGG GATCTTAGAT GCTACCTAAA AGTGTCGTTG CGTTGTAATG 
ACCGTTTCAT ACCATATAAT ACCCAGTACA TATTTTAGCC ATATGGAAGG 
TAATTTGTC

Gene models with high sequence identity

AT4G17890.1 [+] show detail - ARF-GAP domain 8
E-value: 1e-82; Score: 304.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Arf GTPase activating protein	3.5e-36
HMMPanther	ARF GTPASE-ACTIVATING PROTEIN	9.1e-69
HMMPanther	CENTAURIN/ARF	9.1e-69
HMMPanther	ARF GTPASE-ACTIVATING PROTEIN	8.1e-44
HMMPanther	CENTAURIN/ARF	8.1e-44
superfamily	Arf GTPase activating protein	6.5e-36
FPrintScan	Arf GTPase activating protein	1.2e-24
FPrintScan	Arf GTPase activating protein	1.2e-24
FPrintScan	Arf GTPase activating protein	1.2e-24
ProfileScan	Arf GTPase activating protein	26.316
HMMSmart	Arf GTPase activating protein	8.5e-41

See the detailed result >

AT4G17890.1

Model type: Protein coding
Short Description: ARF-GAP domain 8
Curator Summary: A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational Description: ARF-GAP domain 8 (AGD8); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 9 (TAIR:AT5G46750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR