K31728

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31728

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31728

Determination of introduced cDNA(s)

  • J023110G05 - Rice Full-length cDNAs - Original: J023110G05

    full reading [+] show sequence

    Nucleotide sequence: J023110G05 - full reading 
    GGTAGGCCCG TCCTCTCCTC CCGAAGCCAC CACCGGCCCA CCGTCCATCC 
    ACGCCGCCGC ACCACGTGCC CCCACGCCCC CGACGCGCAA ATCACCGCGT 
    GATCCGATCC CCCCTTCTTC CCAAAGTCCA AGCCTCACTC TCTCCCTCTC 
    CATCCCACGC CTCGCTCACT AGCGCACAGA TCTCCTACCA CCACCACCAC 
    CGCCGCAGCC ATGGCGACCG GGTACTACCG CGGCGGCGGC GGCGCCAGGG 
    ACCACGCCGA CGAGCCCGAC GACTTCGACG AGTACGACCC CACGCCGTAC 
    GGCGGCGGCT ACGACCTCTT CATCACCTTC GGCCGCCCGC TCCCGCCCTC 
    CGACGAGACC TGCTACCCTT GCTCCGCTCC CTCCACCTCC TACGACGCCC 
    CGCACTACTC CGCCGACGAG CCCTCCCCCT ACGCCCACCA CTCCAAGCCG 
    CAGCCCGCCT ACGGCTTCCG CCCCCAGCAC GAGCAGCAGC AGCAGCCGTC 
    CTACGCCTCC TCCGGCTACC GCCCCCAGCA CGAGCAGCAG CAATCCTACG 
    GCTCCTCTGG CTACGGATCT AAGCCCCAGC CCGCCTATGG CTTCCGCCCC 
    CAGGCCGAGG AGGAGAACAC CTACGGCTCC GGCTATGGAT CTGGGTACGG 
    TGGTGGAGGA AGGAAGCAGC AGGAAGAGGA GAGCTACGGC TCCGGCTACG 
    GTCGCAAGCC GCAGGTCGAG GAGAGCTATG GATCAGGGTA TGGGACCAAG 
    CCGCAGCAGG AGGAGAGCTA TGGATCAGGG TATGGATCTG GGTATGGGAC 
    CAAGCCGCAG CAGGAGGAGA GCTACGGCTC CGGCTATGGG AGGAAGCCGC 
    AGCAGGAGGA GAGCTACGGA TCGGAGTATG GTTCCGGCTA TGGGAGGAAG 
    CCGCAGGCCG AGAGCTATGG ATCGGGGTAT GGGAGCAGGC CACAGCAGGG 
    TGGGGAGGAG TATGGTAGCG GTGGGTATGG GAGGAAGGCT CAGGAGGAGA 
    GCTATGGTTC CGCGGGCTAT GGCGGCAGGA AGACCGAGGA AGAGAGCTAT 
    GGTGGTGGTT CTGGTTATGG ATATGGGAAG AAAGCCCAGG AAGAGAGTGA 
    AGGGACCTAT GGCTCTGGTG GTTACCCCAA GCCGAAGCCT TACAGTCAGG 
    AGGAGACGCA GGGTTCTTAT GGGTATGGGT ACGGCGAGAA GCCTGCGTAT 
    GAGAGTGGTG GATACAACAA GCCGAGCTAT GGCGGGGGAG ACGAATACCA 
    GGGAGGCTAC GGCCGCAAGA AACATGATGA CAATGACTCT GATGATGAAA 
    AGAAGCAGCG TTATCAGAAG CACCACCACC ATCGCCGCCA GGAGTACGAT 
    GATTAAGCTT CCGGTGCGTT ATCTTCTACG GGGCCATCGA TTGCTGCTAT 
    CACTTGCCAG CCATAGTACT CTGCGTGAAT AAAAGATGCT CCTGCTCAGT 
    CGTTTCATCG TTCGTCTCAT GGACACTATT TGTTATCCGT CTCCATGATA 
    GTATGATGTC GCTTCAACAC TGATAATAAA TTGTGGCTTT GCGCGTGTTT 
    TTTTATGTTT GAAGCATGTC TAAACAATCA CTCTGTCAGT TATCATTTCT 
    TTGCTTGGGA TGATTGGTGT ATATATGTGC CCCTGTTGCG TCT

    Gene models with high sequence identity

    1. AT5G39570.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
      E-value: 1e-26; Score: 118.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan PRICHEXTENSN 8.3e-09
    FPrintScan PRICHEXTENSN 8.3e-09
    FPrintScan PRICHEXTENSN 8.3e-09
    FPrintScan PRICHEXTENSN 8.3e-09

    See the detailed result >

    AT5G39570.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR