K31736

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31736

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31736

Determination of introduced cDNA(s)

  • J033065A06 - Rice Full-length cDNAs - Original: J033065A06

    full reading [+] show sequence

    Nucleotide sequence: J033065A06 - full reading 
    GGAACGAAAA TAAAGAGGCT TTTTGCTCGC ACCGCGCCGT CCTTGTCACG 
    GGCCGCGCTC ACCAGCTCAC ACACACACAC TCGCAACCAC CGCGCTCGCC 
    GCGCGCGCTC TCGGCGCGCC ACGGCCTATA TAAAGTGGCA GTGGCGAGGA 
    GCAAGGGGAG CAACGACCAT GGCCATGGCG GCGAGGGGAG TGTTGGCCAT 
    GGTGGTGGCG GTGGCGGTGG TGTGGTGCAA TAATGTGGCG AGGGCGCAGA 
    CGCCGGTGTT CGCGTGCGAC GCGTCGAACG CGACGGTGTC CGGGTACGGG 
    TTCTGCGACC GGACGAAGAG CAGCGCGGCG CGGGCGGCGG ACCTGCTGGG 
    GAGGCTGACG CTGGCGGAGA AGGTGGGGTT CCTGGTGAAC AAGCAGGCGG 
    CGCTGCCGCG GCTGGGGATC CCGGCGTACG AGTGGTGGTC GGAGGCGCTG 
    CACGGCGTCT CCTACGTCGG CCCCGGCACC CGCTTCTCGA CGCTCGTCCC 
    CGGCGCCACC AGCTTCCCGC AGCCCATCCT CACCGCCGCC TCCTTCAACG 
    CCTCCCTCTT CCGCGCCATT GGCGAGGTGG TGTCGACGGA GGCGAGGGGC 
    GATGCACAAC GTCGGGCTGG CGGGGCTCAC GTTCTGGAGC CCCAACATCA 
    ACATCTTCCG CGACCCGCGG TGGGGACGCG GCCAGGAGAC GCCCGGCGAG 
    GACCCGCTGC TCGCCAGCAA GTACGCCGTC GGCTACGTCA CCGGCCTCCA 
    GGACGCCGGC GGCGGCAGCG ACGCGCTCAA GGTCGCCGCC TGCTGCAAGC 
    ACTACACCGC ATACGACGTC GACAACTGGA AGGGCGTCGA GCGCTACACC 
    TTCGACGCCG TGGTGTCCCA GCAGGATCTG GACGACACGT TCCAGCCCCC 
    GTTCAAGAGC TGCGTGATCG ACGGCAATGT GGCCAGTGTT ATGTGCTCCT 
    ACAACAAGGT CAATGGGAAG CCTACCTGTG CAGACAAGGA CCTCTTGTCA 
    GGAGTCATCA GAGGGGACTG GAAGCTGAAC GGATACATTG TGTCGGATTG 
    CGATTCGGTT GACGTACTGT ACAATAACCA ACACTACACC AAGAACCCTG 
    AAGACGCAGC TGCCATCACA ATCAAATCAG GTTTGGACCT GAACTGCGGC 
    AACTTCCTGG CGCAGCACAC CGTGGCGGCG GTGCAGGCCG GGAAGCTGTC 
    GGAGTCCGAC GTCGACCGGG CCATCACCAA CAACTTCATC GTGCTCATGC 
    GACTCGGCTT CTTCGACGGC GACCCGAGGA AGCTCCCCTT CGGCAGCCTC 
    GGCCCCAAGG ACGTGTGCAC GTCGTCGAAC CAGGAGCTGG CCCGCGAGGC 
    CGCGCGCCAG GGCATCGTCC TCCTCAAGAA CACCGGCGCG CTGCCGCTCT 
    CCGCCAAGTC CATCAAGTCC ATGGCCGTCA TTGGCCCCAA CGCCAATGCC 
    AGCTTCACCA TGATCGGCAA CTACGAAGGT ACGCCGTGCA AGTACACGAC 
    GCCGCTCCAG GGCCTCGGCG CCAACGTCGC CACCGTGTAC CAGCCGGGAT 
    GCACCAACGT CGGGTGCAGC GGGAACAGCC TCCAGCTCAG CGCCGCCACG 
    CAGGCCGCGG CGAGCGCTGA CGTGACCGTG CTGGTGGTCG GCGCCGACCA 
    GTCCGTGGAG CGCGAGAGCC TGGACAGGAC GAGCCTCCTC CTGCCAGGAC 
    AGCAGCCGCA GCTCGTCTCG GCTGTCGCCA ACGCCTCCAG GGGCCCCGTC 
    ATCCTCGTCG TCATGTCCGG CGGGCCGTTC GACATCTCCT TCGCCAAGTC 
    CAGCGACAAG ATCTCCGCCA TTCTTTGGGT CGGCTACCCC GGCGAAGCCG 
    GTGGCGCCGC CCTCGCCGAC ATCCTCTTCG GATACCACAA TCCTGGTGGA 
    AGGTTGCCGG TGACGTGGTA CCCGGCGTCG TTCGCCGACA AGGTCTCGAT 
    GACCGACATG CGCATGCGGC CGGACTCGTC GACCGGCTAC CCCGGCCGGA 
    CATACCGGTT CTACACCGGC GACACGGTGT ACGCCTTCGG CGACGGCCTG 
    AGCTACACCA AATTCGCGCA CAGCCTCGTG TCGGCGCCGG AGCAGGTGGC 
    CGTGCAGCTG GCCGAGGGCC ACGCCTGCCA CACCGAGCAC TGCTTCTCGG 
    TGGAGGCCGC CGGCGAGCAC TGCGGGAGCC TGTCCTTCGA CGTCCACCTC 
    CGCGTGCGGA ACGCCGGCGG GATGGCCGGC GGGCACACCG TGTTCCTCTT 
    CTCGTCGCCG CCGTCGGTGC ACAGCGCGCC GGCGAAGCAC CTGCTCGGGT 
    TCGAGAAGGT GTCGCTGGAG CCCGGCCAGG CCGGCGTGGT GGCGTTCAAG 
    GTGGACGTGT GCAAGGACCT GAGCGTCGTC GACGAGCTCG GCAACCGGAA 
    GGTGGCGCTG GGCAGCCACA CGCTGCACGT CGGCGACCTC AAGCACACGC 
    TCAACCTGAG GGTTTAAATT GATTAGGAGT TGGAATTAAA CGGGAGATTT 
    GCTAGTGAGG AAGGGCCTCT GATCTGATTG ATACACGGAG TTTGGAATTG 
    GATTCGTCAA GGGAATTTGC ATTACGAGTG GCCGTCAGAA ATCAGAATTG 
    GTTAATGGGG GGTGTAATAA GGACGGACTC CCCCGTTGGA GAGAATTGGA 
    TCCTCGGGGG TGGGTCTTTT GCTGTGGGTG TTAACATTTG ATTTATTTGG 
    AGGGTCGATT TGCAACTGTA ATCTTTGGAA AAAGAAATTT CCGCAAGTGT 
    AATTGATTGG AAGGGAAATT AGCTCATTTT CGTCCATTCA ATTCAATTCA 
    AAATTTCAAA TCGTTGCTCT C

    Gene models with high sequence identity

    1. AT5G64570.1 [+] show detail - beta-D-xylosidase 4
      E-value: 0; Score: 162.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glycoside hydrolase, catalytic core 3.5e-22
    superfamily Glycoside hydrolase, catalytic core 1.7e-72
    superfamily Glycoside hydrolase, family 3, C-terminal 7.5e-28
    FPrintScan Glycoside hydrolase, family 3, N-terminal 1.8e-07
    FPrintScan Glycoside hydrolase, family 3, N-terminal 1.8e-07
    FPrintScan Glycoside hydrolase, family 3, N-terminal 1.8e-07
    HMMPfam Glycoside hydrolase, family 3, N-terminal 9.6e-05
    HMMPfam Glycoside hydrolase, family 3, C-terminal 6.3e-51
    HMMPfam Glycoside hydrolase, family 3, N-terminal 2.3e-43
    Gene3D Glycoside hydrolase, family 3, N-terminal 1.4e-16
    Gene3D Glycoside hydrolase, family 3, N-terminal 4.5e-60
    Gene3D no description 1.7e-49

    See the detailed result >

    AT5G64570.1

    Model type
    Protein coding
    Short Description
    beta-D-xylosidase 4
    Curator Summary
    Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
    Computational Description
    beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR