K31746

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31746

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31746

Determination of introduced cDNA(s)

  • J023100A19 - Rice Full-length cDNAs - Original: J023100A19

    full reading [+] show sequence

    Nucleotide sequence: J023100A19 - full reading 
    GATGGTACAA CAACCGAGAG CTCGCTAGTC GTCGTCCTCG AAACGCTCGC 
    GGCGACTCCG GTGGCTGCCG CGCCGCCGCC TCCGGCCGCC GTACCAGCCT 
    CACCTCGCTT CGATGGAGGA TGGAGTGTCT ACTTATACTG TTGATGAGGC 
    TCTTATTTCC ATGGGGTTTG GGAAATTTCA AGCATTTGTG CTTGCGTACT 
    CCGGAATGGC CAAGATATCT GAGGCAATGG AAATGATGCT TTTGTCATTT 
    GTTGGACAGT CGGTTCAGGC TGAATGGGAG CTTTCTGCGC AGGCAGAATC 
    TCTCATCACA AGTGTTGTTT TTGTAGGTAT GCTTGTAGGA GCATATTCTT 
    GGGGCATAGT CTCAGACAAC TATGGGAGAA GGGTTGGGTT CAATTTCACA 
    GCCCTTGTAA CTGGTGGGGC TGGTCTTCTT AGTGCATTTG CACCAAATTA 
    CCTTTCTTTG ATCGTGCTGA GGTTTATGGT TGGTGTTGGA CTGGGTGGTG 
    GACCAGTTTT ATCTTCCTGG TTTTTGGAAT TCATTCCTGC TCCTAACCGA 
    GGAACTTGGA TGGTTATTTT CTCAGCATTT TGGACCATTG GCACAATAAT 
    GGAAGCTTCA CTAGCTTGGG CTGTAGTGCC AAGTTTGGGC TGGAGGTGGC 
    TGCTAGCGTT CTCATCGTTG CCATCATTTG CTCTACTACT GTTCTATCCA 
    CTGACACTGG AATCACCAAG ATACTTATGC ATGAAGGGCA GAACTGCTGA 
    TGCGGTGCAG GTTTTGGAAA CAATGGCACG ATTAAACCGT GTAGCTCTCC 
    CTTCTGGCCA TCTTATGTCT GGCCATCGAA TGGAGCTCCA TGAGTTGACA 
    GATTCCTCAG AGACGTCACA GTTGCTTTCT GCTAAGAAAA CCAACCCTGC 
    TGCTCATTCT AGCAAACCGA GATTGGGGGC CGCAATGCGA TTTTAAAGCT 
    TCTGTCCCCA AATTTAATTA GATCTAGTCT TCTTCTTTGG ACTGTCTTTC 
    TTGGTCATGC CTTCTTATAC TACGGTCTTG TTCTACTAAC CTCGGAATTG 
    AGTCATGGAA ATAAGATTTG TGGATCAGAG GGGATAGTAA CAATGCAAAC 
    AAACCACTCA AACGATGCTA ATCTGTACAG AAACGTGTTC ATCACTAGCT 
    TTGGAGAGGT TCCTGGCCTT ATACTATCTG CGGCAATAGT GGACAAGATT 
    GGGCGCAAAC TCTCAATGTC CTCTATGCTT TATATCAGTT GCCTGTGCAT 
    AGCTCCCCTT ATGGTCCCTC AAACAGAGTC CCTGACAACT ATCTTCCTGT 
    TCGGTGCACG CATTTGCATC TCCGCAAGCT TCATTGTCTT GCACATCTAT 
    GCTCCTGAGA TATACCCAAC CGCAGTCAGG GCTACCGGAG TCGGGTTTGC 
    GAGCTCAATC GCTCGTTTCG GTGGGATCTT GTGCCCTCTT GTGGCCGTTG 
    GTTTGGTGCA CGCGTGCCAT CAGACTGCAG CCATCCTGAT ATTCATCACG 
    GTGATGCTCG TCTCAGGTGT TGCAGTCTCA TACTTTCCCC TGGAAACAAG 
    CGGCCGGAAA TTGAGTGACC ACATCGCGGC GTAAGAGCTA AGTTGCGAGC 
    AGAATCTGAC AGTGTTGCAA GTGCTAGTTT CTTTAGCTAT ACAAAGTTAC 
    AGGATTGAGC TCCTAGAGGC CATTCAGATT TTTTTTTTCT TTCAGTTCGT 
    TTAAAGATCA TATATATAGA ATAGAAATGA AAGATGGTGG ATTTCAGATT 
    TTAAATGTCA TTACATTGTT TTAACCAGAC ATATGTAAAC TGCCAAATCG 
    AGATGCTTGC TTTGCTCTCT TGAAATGGGA TGATCAATAT GTTTTGAAGG

    Gene models with high sequence identity

    1. AT3G13050.1 [+] show detail - Major facilitator superfamily protein
      E-value: 3e-150; Score: 257.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Sugar transporter, conserved site 0
    HMMPfam Major facilitator superfamily MFS-1 0.0000000000081
    HMMPfam General substrate transporter 1.7e-28
    ProfileScan MFS 27.541
    superfamily Major facilitator superfamily, general substrate transporter 4e-20
    superfamily Major facilitator superfamily, general substrate transporter 1.6e-39
    HMMPanther SUGAR TRANSPORTER 9.3e-66
    HMMPanther SUGAR TRANSPORTER 9.3e-66
    HMMPanther SUGAR TRANSPORTER 1.3e-92
    HMMPanther SUGAR TRANSPORTER 1.3e-92

    See the detailed result >

    AT3G13050.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter4 (TAIR:AT3G20660.1); Has 38439 Blast hits to 37687 proteins in 2363 species: Archae - 738; Bacteria - 22281; Metazoa - 5017; Fungi - 6515; Plants - 2234; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR