K31748

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31748

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31748

Determination of introduced cDNA(s)

  • J023036L18 - Rice Full-length cDNAs - Original: J023036L18

    full reading [+] show sequence

    Nucleotide sequence: J023036L18 - full reading
    GGTGTTTCCA TTGGAATGGA ATGGATGGGG ATAAGTGAAA AATCAAAAAG 
    GGCATGGCAA TTGGTGGGTT AGAACTGAAC TGTGAGGAGC TTCAGAGACT
    ATGGAGCAAG GTGTAGCTGG AGAAAACGTG TACAACACAG AGAGACTGCA
    CAGCTACGGA AGTGGTAAAC ACCAGTGCTA GTATATGTAT GGATTGAAGG
    TAACGTAGCA TTTGCCTTCA CCACAACTCT GCAAGTCACC AGCATGGCTA
    TCAAGCTTAC AAAATATCAG TTCTTTTCTT CTCGTGCCAC TGCACTGCAC
    CTAAGGAGGA GAGAGCTGAA GTTGCTTCCA TTCCCATCTT TTCCCTGCAG
    CTCTAGTTCA GCTCCTAACA CTTGTTCACA GCAAAGTCAT CTCCTGTTAG
    TTTCATCTGC AGGACCTAGA GAACAAACAT TACTTCCGGC TGATTCCCGT
    TCTTCTCTCC CTCATGGCAT CACTGATAAC GGTACAAGAA AGGAAGGAAG
    GAGGAGGAGG AGGGGGAGAA AGAGGAAGGA GACAGCAAAA GATGAAGGGG
    AGTGTGTTCC ATCTGCGGAG GAAGTGTCCA TTAGGGTAAA TACTCTTTAT
    GAGAGTGGCG ACCCCATTGG GAAGAAGGAG TTGGGCCGGT GCGTGGTACA
    ATGGCTAAAG CAGGGTATGC ACTCAATGGC TATAAAATAT GCTTCCACAG
    AAATGCAGAA CGATGGAGCA ACATTCTTAC TGGATGGTGG ATCATCTGAA
    GACAACCTCG GATTTGTGAT GCTTGCACAG CCTTATCTAT CAGCAATTCC
    CATGCCCAAG GGACAGGAGG CGCTCTGCCT CAAGGCCTCT ACTCACTATC
    CTACCCTCTT TGACCACTTT CAAAGGGAAC TCCGTGATGT TCTGTTGAAA
    CAACAGAACC AGGGTCTTAT TTCTGATTGG CGCACCACTC AATCTTGGAT
    GCTTCTGAAA GAATTGGCTA ACTCAGCTCA GCATCGAGCA GCTGCCCGCA
    AACCTAAAGC TCCTACTACG CACAGTACTC TTGGCATAAG TCTTGATAAG
    ACAAGGTTGA TGCAGACCAA AATTGAAGAC TTTGTCAAGA AAATGTCAGA
    CCTTCTACAT ATAGAACGAG ATGCGGAGCT GGAGTTTACA CAAGAAGAAC
    TGAATGCCAC CCCTGTGATG GATGGGAACT CAAAGAAGCC ACTCAAACCA
    GTAGAGTACT TAGTCACTCA TGGGCAGTCA CAGCAAGAGC AGTGCGATAC
    CATTTGCAAT TTGAATGTTA TCAGCAGTTC AACTGGGTTG GATGGCCAGC
    ATCTGGTCCT ATTTAGAGTG AAAGATAACC ATAGATTGCC TCCAACCACA
    CTCTCTCCTG GGGATATGGT TTGTATCAGG ACATGTGATA ACCGGGGGGA
    AATTACCACA TCTTGCATGC AAGGCTTTAT ATATAATCTT GGTGAGGATG
    GTTGCAGCAT TACCGTGACA CTGAAATCCC GCCGTGGTGA TCCTACGTTC
    TCCAAGCTTT TTGGGAAAAA TGTGCGGATT GACAGGATTC AGGCATTGGC
    TGACGCACTT ACATATGAGC GAAATTGTGA AGCACTGATG CTTCTTTCAA
    AGGAAAGGTT TACAGAAAAA GAATTCTTCC ATTGGAGTAG TAGCCACTCT
    GTTTGGGGAC AAGGAAGACA TGATGATGAT GGAGCAGAAT AATCTGGCTG
    ATTGGGGAGA ATCAACAATA CATGATGATG AGCTATTGAA AAAGAACAAA
    TATGACTTTG ATGCCTCCCA GTTAAAAGCT ATCACACTAG GCTTGAACAA
    CAAAAGGCCT GTCCTAATAA TCCAAGGACC TCCTGGCACG GGCAAGACTG
    GTTTGCTTAG TTATCTCATT GCATGTGCTG TCCGAAAGGG TGAACGCGTT
    CTCGTAACTG CTCCAAGCAA TGCAGCAGTT GATAACATGG TGGAGAAGTT
    GTCAGATACT GGACTGGACA CAGTACGAGT TGGAAATCCT GCTAGGATAT
    CTCCATCTGT TGCTTCAAGG TCCTTGGGAG AGCTTGTGAA CAGAAGACTT
    CAGAAGTTCA CAGAAGAGTT CGAGAGGAAA AAATCCGACT TGAGAAAGGA
    CTTGAAGCAT TGCATACAGG ATGATACATT AGCCGCAGGT ATACGTCAAC
    TGTTGAAGCA GCTTGGGAAG AACTTTAAAA AGAAGGAAAA GGAAATAATC
    AGAGAGGTCC TTTCAAATGC TGATGTTGTC CTATCAACTA ATATTGGGGC
    AGCTGACCCA CTTGTGAGGA GGATTGGTTG CTTTGACTTA GTAATTATTG
    ATGAAGCAGG ACAAGCAATC GAACCCTCAT GCTGGATCCC TATCTTACAA
    GGAAAAAGAT GCATTCTTGC TGGTGATCAA CGGCAGCTTG CACCTGTTGT
    TTTATCAAGA GAGGCTATGC AAGGTGGACT AGCAATGTCT TTACTCGAAA
    GAGCTTCATC GTTGCATAAT GAACTACTGA CAACGAAATT AACAACACAA
    TACAGAATGC ATGATTCAAT TGCCAGTTGG GCATCTAACG AGATGTATGA
    TGGTTTTCTC AAATCCTCCC CATCCGTTGC TTCTCATCTT CTTGCTGATT
    ACCCATTTAT CAAGGAAACT TGGATAACTC GGTGTGCCTT TCTTTTACTT
    GACACTCGTA TGCCGTACGG AAGTTTGAAT ATTGACTGTG AGGAGCATTT
    AGACCCTGCT GGTACAGGAT CTTTTTATAA CAATGGCGAG GCAGATGTAG
    TTTCACAGCA TGTTTTGAAC CTTGTACAAT GTGGTGTCTC TCCAACCGCG
    ATTGCCGTCC AGTCACCTTA CATTGCGCAA GTACAACTAT TAAGAGACAG
    GCTAGAAGAT TATCCAGAGG CTTCTGGTGT TGAGGTTTCA ACTATAGATA
    GCTTCCAAGG GAGGGAGGCA GATGCCGTGG TCATATCAAT GGTACACACT
    TCCTTTGCTG TCTTTATAGG GTAGTCCTTC TTGGTTTGCT GTAAGGTGAC
    CGTGGTACTT CAAATGCCGT GTTGAACCAT ATAATCTCAT GTCAATAAAA
    GTTGCAGGTC ATTCTT

    Gene models with high sequence identity

    1. AT5G35970.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 0; Score: 413.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain 0.0000074
    HMMSmart DEAD-like helicase, N-terminal 0.0022
    superfamily P-loop containing nucleoside triphosphate hyd 6.9e-29
    HMMPanther DNA-BINDING PROTEIN SMUBP-2 1.5e-121
    HMMPanther DNA2/NAM7 HELICASE FAMILY 1.5e-121

    See the detailed result >

    AT5G35970.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 6377 Blast hits to 5712 proteins in 1082 species: Archae - 188; Bacteria - 2376; Metazoa - 1211; Fungi - 1055; Plants - 600; Viruses - 0; Other Eukaryotes - 947 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR