K31751

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31751

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31751

Determination of introduced cDNA(s)

J033075M04 - Rice Full-length cDNAs - Original: J033075M04

full reading [+] show sequence

GTTAGTACAG TTACATTTTA TATGACTCTA CCCTGGTAAT CTTGTTATTA 
GAGTAACATT TATATTTGGA CCATGTCTAG AAGTAGTGGA GTCATTATGT 
CCAAACTACA AATTATGCAC TACCTGAATA ACAGTGTAGC ACTCTTACAG 
CTGATCATCC GCAAAGAATG AAATGGTGTG GCGTAGAGTA CGTTCTGAAT 
AAATAGTGTG ACATGACATG ATCTCTGCAT TTTTTTTATA ATATCCTTCT 
GCAGATACTA CAATGACTTA CATGTTTTTG ATTTAGATAA TTTCAAGTGG 
GAGGAGATCA AGCCTCGCCC TGGGTGCTTG TGGCCAAGTC CAAGAAGTGG 
CTTTCAGCTA ATGGTATACC AAGATCAGAT ATATCTGTAT GGCGGATATT 
TTAAAGAAGT AGTTTCTTCT GACAAATCTG CATCAGAAAA AGGAACAGTT 
CATGCAGATA TGTGGACTCT TGATCCTCGT ACTTGGGAGT GGAATAAGGT 
TAAGAAAACT GGGATGCCAC CTGGCCCCAG AGCTGGGTTT TCTATGTGCG 
TTCACAAGAA AAGGGCTGTT CTTTTCGGTG GTGTGGTAGA TATGGAAATT 
GAAGGGGATG TCATTATGAG CATGTTTATG AATGAGCTCT ATGGTTTCCA 
GCTGGACAAC CATCGCTGGT ATCCTTTAGA GCTCAGGAAA GACAAGCCTG 
CTAAAAATAA GACAAAGGAC ATCAAAAGAA AAGAACCATC GAACAATGTG 
GAAGATAATC TTGGTAATGA GGAGGATGAG ATCATGGAGG ACTCAGAAAC 
TACTGGAGGG CAATCCGAAG TCCATGGGGT TTCGAATCAC TTGACCAAGA 
GTCTAACCTT AAATAAAGCT GGCTCAGGCA ATAGCTCTGA TATTCTCTCT 
GATTCGACAA CACAAGAAGT ACTCCCAGAG GCAGTGAAAC CCGGTGGTCG 
GATCAATGCA TGCTTGGCTG TAGGGAAAGA TACACTCTAT TTATATGGAG 
GAATGATGGA ATTGAAAGAT AGAGAAATTA CTCTTGATGA TATGTATTCA 
CTTAACCTTA GCAAACTAGA TGAGTGGAAG TGTATCATAC CGGCATCTGA 
ATCTGAATGG CTAGAAATTT CTGAAGATGA GGATGATGAA GATGATGATG 
ATGATGATAA TGAGAATGAT AGCGAGGATG ACGCTAATCA GACCGATGAA 
GATGATGAAG AGTCTGATGA AGATGCCGAG AAGAATGTCG ATATGTCCAC 
TGCTGTATCG CTAATAAAGG GTGAACGTAA GAACTTGCGA AGAAAAGAGA 
AGCGTGCTCG GATAGAGCAA ATTCGGGTTA TGCTCGGTCT TTCTGATTCT 
CAAAGGACTC CAATGGTGAT GTTGTAATCA ACATTTTTTT GTTCTAAATT 
TGTTTGAAGT TGTTCCGACA AAGTACATAT ACTTTGTTTA CTCAGAGGAA 
CTCTTGGCTG ATAATTTGTT ACACACAGTT AACAATTAAA ACCATATATC 
ACTAATTCCC ATATTCACAC TTTTAAAGCC AGGAGAGTCA CTAAAAGATT 
TCTACAAGAG AACGGATATG TACTGGCAGA TGGCTGCATA TGAGCACACT 
CAACACACTG GAAAGGAGCT CCGCAAAGAT GGTTTTGATC TTGCCGAAAC 
TCGATATAAG GAACTGAAAC CCATACTCGA CGAGCTGGCT GTGCTCGAGG 
CTGAACAGAA AGCTGAGGAA GAGGCTAGTG CTTCCACTAG TTCCAAGAAA 
GACACGAAGA AAAGCAAGCA GAAGAGTGGC ATGAGATAGC TTTGGTTCGA 
AATATCGAAA TAGAGAGTGG TTTAGGCCAA TGCTTTAAGC CATCTGGGAT 
TTTTTCCTTT CTGAGCCATT GGTCAGCTCG ATCGATTAAT CCACACGAGG 
TGCCTATAAC TACCTGTGTA GGTTGGCTTA ATCCATGGTT AAAATTTTCC 
AACGTACTGT ATTTGCGATT CCTCGGAAGC ATTCATGGAG AGATTGTACA 
CAGTTCTATT CATCGGAAAT TCGTTACTAC GT

Gene models with high sequence identity

AT5G50310.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
E-value: 2e-120; Score: 430.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Galactose oxidase/kelch, beta-propeller	6.5e-14
HMMPanther	KELCH DOMAIN CONTAINING 4	4.5e-113
HMMPanther	KELCH REPEAT DOMAIN	4.5e-113
Gene3D	Kelch-type beta propeller	1.3e-12
ProfileScan	PROKAR_LIPOPROTEIN	7
HMMPfam	Kelch repeat type 2	2.2e-08

See the detailed result >

AT5G50310.1

Model type: Protein coding
Short Description: Galactose oxidase/kelch repeat superfamily protein
Computational Description: Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G07720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR