K31802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31802

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31802

Determination of introduced cDNA(s)

J013118K06 - Rice Full-length cDNAs - Original: J013118K06

full reading [+] show sequence

GACCGCGCGC GCAGCACTCG CAGGAGAGGA TCGAGTTAAC CAAGTACGAA 
GCGAGTAGTT AGCGGGCGAG TACGTGGTGT TTGTCATGGA GGACGAGGCG 
ACGTCGGTGG CGGCGCCGCT GCTGCGGCCG CGCGGCGGCG TTGACGCGGA 
GGCGGTGAAG CAGCAGCTGT GGCCGGCCGG CGCGAGGGTG GCGGGGGAGT 
GGTGGGTGGA GTCGAAGAAG CTGTGGCGCG TCGTCGGGCC GGCCATCTTC 
CAGCGGATCG CGCTGTACGG GATCAACGTC GTCTCGCAGG CGTTCATCGG 
CCACATGGGC GACCTCGAGC TTGCCGCCTT CTCCATCGCC TCCACCGTCG 
TCGCCGGCTT CAACTTCGGT TTCCTGCTGG GCATGGCGAG CGCGCTGGAG 
ACGCTGTGCG GGCAGGCGTT CGGCGCCAAG AAGTACCACA TGCTGGGCGT 
GTACCTGCAG CGGTCGTGGC TGGTGCTCCT CATGTTCGCC GTCGCGCTGA 
CGCCGACGTA CGTGCTCATG GAGGACCTGC TGCTGCTGAT CGGGCAGCCG 
GCCGACCTCG CCAGCCTCGC CGGCAAGATG AGCGTCTGGC TGCTGCCGCA 
GCACTTCGCC ATGGCGATGC TGCTCCCGCT CACGCGGTTC CTGCAGTCCC 
AGCTCAAGAA CTGGGTCACC GCGGTCACCG CCGGCGTCGC GCTCGCGCTC 
CACCTCGTGA TCACCTACCT GCTCGTCAAC ACCCTCCACC TGGGCCTCCT 
CGGCGCCGTC GCCGCCGCCA ACGTGGCGTG GTGGATCGTC GTGCTGGGGC 
AGTTGGTCTA CGTCGTCGGC GGCTGGTGCC CGCTGTCGTG GAAGGGATTC 
TCCATGGAAG CGTTCGCCGA CTTCTGGGAG TTCATCAAGC TCTCCTCGGC 
CTCCGGGGTG ATGCTTTGCT TGGAGAACTG GTACTACAGG GTGTTGGTGT 
TGCTTACAGG GTACCTGAAT AACGCTGAAA TCGCTGTGGA TGCACTCTCC 
ATATGCTTGA CGATCAACGG ATGGGAGATG ATGATTCCTT TTGGCTTCTT 
GGCTGCAACT GGCGTGCGGG TGGCAAACGA GCTCGGCGCC GGCAGCGGCA 
AGGGCGCGCG GTTCGCCATC GTGGTGTCCG TCACCACCTC CGTGGCGATC 
GGCCTCGTCT TCTGGTGCCT CATCATTGCC TACAACGACA AGATCGCTCT 
CCTCTTCTCG TCGAGCAAGG TGGTGCTCGA CGCCGTCAGC GACCTGTCCG 
TGCTGCTCGC CTTCACCGTC CTCCTCAACA GCGTGCAGCC CGTCCTCTCA 
GGTGTGGCCA TTGGCTCAGG GTGGCAAGCA CTCGTAGCCT ACGTCAACGT 
CGGTAGCTAC TACTTGGTCG GAGTTCCCAT CGGTGCCATA TTGGGCTGGC 
CATTGCATTT CGGAGTTGGG GGAATTTGGT CCGGGTTGAT TGGTGGCACA 
GCTGTTCAGA CACTGATATT AGCCTATCTC ACTATCAGCT GTGATTGGGA 
TGAAGAGGCA AAGAAAGCAA GTACAAGGAT GGAAGTATGG GCCAGCTCAA 
AATGAAGCAA CCAAGTACCA ACAGTGTGTT GGTGAGGTTT CTTGGACACA 
CAAAGGGGGC ACTTCAGTGG GCAGCAGAAG AACCGCAACT TCTGCTCAGT 
ACAAAGAGGC AAACCATCAG AATAGATCAA GAAGACGAGA ACATTTTGGA 
AGGCATAGCT GGTGTTTCAC ATATAGACAT ATTCACGTTA CCTTAGGCTG 
CAGACAGCCA GTTTCTGAAG ACGCTCGTTT GCCAAGAGAA CATTGGAGAA 
GAGTGCAGAG GCTTGCGTAG GGTGATAGTA TGTGTGAGTT GGGATTATAT 
TTATTAGCCT TGTAACCTGA AATTTGCACT CGGTTGCAAG TTGCGACATG 
TAAGCACTGA GTATACTATT TAATGGATAT TGCAACTGCA AGCCTGTGTG 
TTGTTCGCGG ATTGTAAGAC GTCCGGACAC TACAAAATGG GCCAGACGGT 
AGCCCATTAC CATCGTGTAT GATATATATG CACCGAAACG AATCCACTCC 
TACGGTCCTA CCTCACG

Gene models with high sequence identity

AT5G65380.1 [+] show detail - MATE efflux family protein
E-value: 3e-134; Score: 476.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	MULTIDRUG RESISTANCE PUMP	2.7e-237
HMMPanther	Multi antimicrobial extrusion protein MatE	2.7e-237
HMMPfam	Multi antimicrobial extrusion protein MatE	1e-25
HMMPfam	Multi antimicrobial extrusion protein MatE	6.5e-31
HMMTigr	Multi antimicrobial extrusion protein MatE	2.6e-63

See the detailed result >

AT5G65380.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G44050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR