K31818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31818

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31818

Determination of introduced cDNA(s)

  • J033003G06 - Rice Full-length cDNAs - Original: J033003G06

    full reading [+] show sequence

    Nucleotide sequence: J033003G06 - full reading
    GGCACTCCTC CCGCCGCCGC CTCCGCCTGC CTCGGAAGTC ACGCCCCTCC 
    CGCCGCAGCG GCAGAGAGAG AGAGAGAGAG ATGGGCTTCC TGTCCTTCGC
    CGGGAGGGTC CTCTTCGCCG CCGCCTTCCT CCTCTCCGCC TACCAAGAGT
    TTAGTGAATT TGGAGTTGAT GGTGGGCCGG CCGCAAAAGC TCTCCAGCCG
    AAGTTCAACA CTATTGTTGC AAATATTTCT ACCCGTACTG GATTAGTGGT
    GCCTCATATT GAATTAAAGC ATATTGTTGC TGCAATGATT TCTTTGAAGG
    GTCTTGGAGG TCTCCTCTTT ATCCTCAGCA GTTCATTGGG TGCTTATCTC
    TTGTTGTTTC ACCTTGCTTT TATTACACCT GTTGTCCACG ACTTCTACAA
    CTATGACATT GAGAGTGCAG AGTTTGTACA GCTCTTCACC AAGTTTGCAC
    AGAATTGCGC ACTTGTTGGG GCGCTCCTCT TCTTCCTTGC CATGAAGAAC
    TCCATCCCTA AGAGGCAGCC CAACAGGAAG AAGGCCCCTA AACCAAAGTC
    GACCTAAAGA TTCTGAACGT CTGAAGCTAC ATTGTTTGCC TAATTGCTGG
    TGCCAGGGGA TGGCTCTCAT CTGGGAGAAA CTCCACAGCT AGCATTTGAG
    GATATGGCAT TTGTGCTTGT GCATGCTTTA ATTCTGAAAG CATCCCTTGA
    TCCTGACCCA TTTTTACCGG ATTTTTTTTA AGGGCGCCTC CCTGATTACA
    TTCTAATGTC TGATTAGACG ACCAGATTGT ACCAACATGT ACTCCCTTTT
    GGTTCTTGAT TCAGTTTCTT AGGAAGCAAT CGTTATTTAT GTACACTCCA
    TTAATTTGCT GGGAAACATC ATCTTCTTGG C

    Gene models with high sequence identity

    1. AT4G14420.1 [+] show detail - HR-like lesion-inducing protein-related
      E-value: 7e-38; Score: 154.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G14420.1

    Model type
    Protein coding
    Short Description
    HR-like lesion-inducing protein-related
    Computational Description
    HR-like lesion-inducing protein-related; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT1G04340.1); Has 163 Blast hits to 163 proteins in 27 species: Archae - 0; Bacteria - 10; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR