K31822

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31822

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31822

Determination of introduced cDNA(s)

  • J033024N05 - Rice Full-length cDNAs - Original: J033024N05

    full reading [+] show sequence

    Nucleotide sequence: J033024N05 - full reading 
    GGGTTTTTGG GTCGGCCTTG TTCGAGCGCT CCACTTGCTC GCGTTCAAAT 
    GGCGGCGGCG GCTTTAGGGC TCCCGGCCTG CGGCGGTGCG GCTCCACGGC 
    GGATCGAGCC GGCGGCGGTG GCTCCCAGCG GAGGCGGCAG CGGTGTCGGC 
    GCAGCTCCAC CGCGGATCGA GGTGGCGGCG GCGGCAGCTT CGGCTTCGCG 
    GTGTGCTCCA CCGCGGGTTG AGGCGGCGGC GGCTGGGCGT GCTCCTTCAG 
    TCCTCCTCCC ATCTCCAACT CCCCCCAAGA CTGTTCCTTC TTTCGGCGGC 
    GGATGGAGGC ACCGGCGGGC GGCGGCTACC TGCTTGGTGG CCAACCGGCG 
    AGGTGCTCCG GAGGACACTC CACCGGCAGC AACGGCGAGG GTTTCGGAGG 
    ACACCCGGCC ACATCGCCAC CTTCTTCCAG CTGGGTTTCT CTAACTCGTG 
    AGCACAATGA GGAAATGCGG ACACCCAACG CATTTTTTGG ACTTGGCACT 
    AACAGTGGTG AAGATATTGA GATGGGTGAT GGTGATAGTG ACTCTGAACA 
    AGTTGGTCCT GTAGATGAGC ATGTGAATCC AGTAATACAA GCTTTAACAA 
    GGAAATTCAG ATCTGAGGCT TGGAAAGAGT TTGTGCCGAT ACTCATTGAT 
    AATGAAGTTG GTGCAGGAAA ATGTAAGCAC TGTGATACAG AGATCCGTGC 
    AAAGCGTGGA GCGGGAACAA GTTCATTGAG GAAGCATTTG ACAAGATGCA 
    AGAAGCGAAT TAGTGCTCTT AAGATTGTGG GAAATCTTGA CTCTACACTT 
    ATGTCTCCTA ATAGTGTAAG GTTAAAGAAT TGGAGCTTTG ATCCTGAAGT 
    TTCTAGAAAA GAGCTCATGC GAATGATTGT ATTACATGAG TTGCCCTTCC 
    AGTTTGTGGA GTATGATGGA TTTAGAAGTT TTGCTGCTAG TCTTAACCCC 
    TACTTCAAGA TTATTTCGAG AACAACTATA AGGAATGATT GCATCGCTGC 
    TTTTAAAGAG CAAAAGTTAG CAATGAAGGA CATGTTCAAG GGTGCAAATT 
    GTAGGTTCTC ATTGACTGCA GATATGTGGA CTTCGAACCA AACAATGGGA 
    TACATGTGTG TGACATGTCA TTTCATTGAC ACAGATTGGA GAGTACAGAA 
    GAGGATTATA AAGTTCTTTG GAGTAAAGAC ACCTCATACT GGAGTGCAGA 
    TGTTCAATGC TATGCTCAGC TGCATTCAAG ATTGGAATAT CGCAGACAAA 
    ATATTCAGTG TTACTTTGGA TTATGCTTCA GCCAATGATT CAATGGCTAA 
    GTTGTTAAAG TGCAATTTGA AAGCTAAGAA AACTATACCA GCAGGAGGGA 
    AGCTACTTCA CAACCGATGT GCAACACATG TCATCAATCT CATAGCCAAA 
    GATGGGTTGA AGGTTATTGA TTCTATTGTT TGCAACATCC GTGAAAGTGT 
    GAAGTACAGG GATAATTCCC TATCTCGCAA AGAAAAGTTT GAGGAGATCA 
    TTGCCCAAGA AGGGATCACA TGCGAGTTGC ATCCCACTGT GGATGTATGT 
    ACTCGTTGGA ACTCCACATA TCTAATGCTC AATGCAGCCT TCCCTTTCAT 
    GAGGGCTTAT GCTTCATTGG CTGTTCAAGA CAAAAATTAC AAATATGCAC 
    CCTCTCCTGA TCAGTGGGAA AGATCAACCA TAGTCTCTGG AATTTTGAAG 
    GTGCTTTATG ATGCAACTAT GGTGGTGTCT GGATCTTTAT ATCCAACATC 
    AAACCTTTAT TTCCATGAGA TGTGGAAAAT CAAATTGGTC TTGGACAAGG 
    AACACTCTAA CAATGACACT GAAGTGGCAA GTATGGTTCA AAAGATGAAG 
    GACAAATTTG ACAAGTATTG GCTTAAGTCT TACAAATATC TGTGCATTCC 
    TGTCATTTTT GACCCAAGAT TCAAATTCAA TTTTGTGGAA TTTCGGCTTG 
    GGCAAGCCTT TGGTGAAAAT GCTAAAGAGA GGATTGACAA AGTTAAGAAG 
    AGAATGAACA TGTTGTTTAA GGAGTACTCT GATAAACTCA AGGATAGCAA 
    TGCTAACCCA CTGCGCCAAG CTGAACATGT GATGGCTATC TCTGAAAATG 
    ATCCTATGGC TGATTGGGTT CAACACATCT CTGAACAATG AAGTGAGCAA 
    GTTGATACTG AATTGGATAT CTACCTCAAA GAGAATCCTA TTCAGGAATT 
    TGGGAACAAA TTTGACATTC TAAATTGGTG GAAGACCAAT CACTCAAAGT 
    ATCCAACTCT CGCTTGCATA GCACAGGATG TGCTAGCATG GCCTGCTTCA 
    ACAGTTGCAT CTGAGTCCGC ATTCAGCACA GGATCTAGAG TGATCAGCGA 
    TTTCAGATGT AGCCTTACAA TGGATTCAGT TGAGGCGCTT ATCTGCCTCC 
    AAGATTGGTT TCGAGCTTCT GCCGGTCCTA ACATAAATGT GAGCTCAGTA 
    AATGAAATCA ACTACAGTGA TAATTTTGTG AACCTGGACC TGGAGGATTC 
    CATGGATGGA CAGGATGGTG GAAGCTTGTG AATGCCCAAA CAAAGGATCT 
    GGATATTGAT GAATCTGGAC CTGGGTGATT CAACGAACAG TGCAAGCTAG 
    GGAATGCCAA ATGATGCCCA CTTTGATCTT GGAAGGCTGC ATTTTGTTTG 
    ATCTCAATAT AATGAACCGG ATATTTGGGT TGTTCAAATC GATTTTTGTG 
    AATGATATGA GTACATGCAT GTACTTAGTT TTAATTGAAC TGGGTGCCAG 
    TACCCAGTGA TTGATGTTTG TACTTTTGAA TGCG

    Gene models with high sequence identity

    1. AT3G42170.1 [+] show detail - BED zinc finger ;hAT family dimerisation domain
      E-value: 4e-91; Score: 333.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, BED-type predicted 1.8e-10
    Coil coiled-coil 0
    ProfileScan Zinc finger, BED-type predicted 10.314
    HMMPanther BED FINGER-RELATED 2.1e-05
    HMMPfam Zinc finger, BED-type predicted 6.3e-08
    HMMPfam HAT dimerisation 2.3e-31

    See the detailed result >

    AT3G42170.1

    Model type
    Protein coding
    Short Description
    BED zinc finger ;hAT family dimerisation domain
    Curator Summary
    transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner.
    Computational Description
    BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR