K31827

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31827

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31827

Determination of introduced cDNA(s)

  • J033035K14 - Rice Full-length cDNAs - Original: J033035K14

    full reading [+] show sequence

    Nucleotide sequence: J033035K14 - full reading 
    GTCCTTGCAA GTCGTCTTCG TCTTCCTCCT TGCCATCTCG CCCAATCTCG 
    AGATTCTCCG CTGCTATTAT CCCCGATCCA AACCCTAATC GATCCCGCCA 
    TGGAAGCGGC GGTGCTCCCG CGACCCGCGG ACATCTCCCC GGAGCTCCGC 
    CGTTTCCTCG ACTCCCGCTT CCGCTCGCAA GCAGACCTCG CCGCGGCCGC 
    CGACGTCGAG GCCGAGATCC GCGGGCGCTA CGCGGAGCTC GAGGCCTCGG 
    TATCCGACCT CTCCGTCCGC CTAGCGGCCG CCGCCGCAGC TTACTCCTCC 
    AGCTGCAGCG CCGCCGGCAC CGCTCTGAGT AATGTCCGCG GCTGCCTCGC 
    TGCCCTGAAT GCCTCCACCT CTGAACCAGG GGTCACAGAA GCGGTGGAGG 
    TTGGGAGCGA GGAGATGTTG TTTGAGCAAC TTTCTTCTCT GGCCAAAGAG 
    GTGGCGAGAG TGGAGTTGGT CAGGGATTAC GCCGAAACGG CGCTAAAGCT 
    TGACAGTTTT GTCGGCGACG TAGAAGATGC TGTTTCATCT TCTGTGACCG 
    GAAAACTTAA ATCTCGTGCA GAAAGTTCAC TGAAAACATA TCATGTTCCT 
    ATTGGATATC TTAAAACAAT AGAAGATATT TTATCTTCAG TCACAAAGAC 
    CAGACCACAA TGGACTCGCC TTGTTTCTGC AGTGGATCAC AGAGTTGACC 
    GATCTTTGGC TCTACTAAGA CCACAAGCAA TTGTCGATCA TCGAGCTCTT 
    TTGGCATCCC TTGGCTGGCC TCCATCACTT TCTGGAACAA ATTTTTCTAG 
    TATTAATTCT GGGAAACCAT CAGAGATTGT GAACCCCTTA TTTTCAATGA 
    AGGGTGACCT GAAAAGCAAG TATTCTGAGA GCTTTCTTTC GCTATGCAGT 
    TTGCAGGAAT TGCAAAAACG TAGAAAAGCT CGACAGCTAG AAGGGCACAT 
    TGTCAACAAT CAACTACGTC AACCATTATG GGTAATTGAA GAGTTAGTAA 
    ATCCAATAGC TGCTGCCGCA CAACGCCATT TCTCCAAATG GGTTGAAAAG 
    CCTGAGTTTG TTTTTGCTCT TGCTTATAAG ATAACTAGAG ACTTTGTAGA 
    TTCCATGGAT GAGATATTAC AGCCCCTTGT GGATAAAGCT AACCTTGTAG 
    GGTATAGTTG CAGAGAAGAG TGGATTTCTG GAATGGTCAT CACATTGTCG 
    ACATACTTGG TGAAAGAGAT ATTTCCTAAG CATATTGAAC TTCTTCAGGA 
    AATTAGCTCG GCTGATGCTA GCAGCAAACA ATCTCAAGCT AGAGTCTCAT 
    GGCTTAATCT TATTGACCTG ATGATATCTT TCGACAAGCA AACCCAAGCT 
    TTGATCTCAA GTTCAGGACT CCTACTTTCG GTGAAGGATG ATGATAATTG 
    GCAGAGGATC TCGGTTCTCT CCGTCTTCTG TGATCGGCCA GACTGGCTTG 
    AAATATGGGC AGAGATTGAG AGACAGGATA CTCATGATAA GCTGAGATTA 
    TCAATGGAGA ATGAGAAAAA CTGGAATACA AGGTTTCAAG GAACAGTGCT 
    TGAATATGGT TCAGATGACT ATAAGTCTCC AGCAATTACC GGTGTAATCC 
    AAAAGGGCCT GTCCTTGCTA ATAGATCGTG CTCGGCCCAT TCCAAATATA 
    GCACTTAGAG CAGAATTCAT TAAGATTTCT ACTTCACCTT TATTATCAGA 
    GTTCCTTGGC TGGATGCTTC AAAGGTGCCA AGAAGCAGAG GGATTAACAG 
    CTCTGGCAGA TGATAATGCT CTTCTCAAGG TATCACAGTC CATTAATGCA 
    GCTCGATACC TTGAGTCCAC ATTGACAGAA TGGTGCAATG ATGTATTCTT 
    TCTTGAGATG GAAAATATAG ATGGCCGTAG CGAATGTATC TTCCAAGTGG 
    AGATAAATCA ACTGAAAGAT TTTAGAGTAC AATGGACTGA AAAGATTTCT 
    ACCGTCATTT TAAGGGATTT TGATGCCCGG TCAAGGGATT ATCTGAAAAA 
    TAAAAGGCAG TGGCAGGAGA AATCAGAAGG GTTAACATTA TCCAGGGCAT 
    TCGTAGAATG TTTAGACTAC ATGCAAGGAC GGATAGCTAA GCTGGAAGAT 
    GGTCTAAATG TCCTGGATTT TGTGACTGTG TGGAGAACTG TGGCAAGTGG 
    AGTAGACCAG CTGCTCTTTT CTGGAATTTT CAGTGGCAGC ACAAAGTTTA 
    GTAATGGCGG GGTGGAAAGA CTTCATGGTG ATCTGAGTAT ATTGTTTGCT 
    GCTTTTTCTG CGTGGTGTAT GAGGCCTGAA GGCTTCTTTC CAAGACTGTC 
    TGAGGGATTG AAGTTATTGG ATATTGATGA GAAGCAGCTA AGAGATGGAG 
    CTTGTACAGA TAACAATCGG CTGAGGGAGT ATGGTATAAG GCGTTTGACG 
    GCTGCTGAGG TTGAGAAGAT AATAAAAAAC AGAATCTATG AGTCGTAATA 
    TATATAAGGA CTAAGGAATA ACAGATAGCA GGGTTGAAGT TCGAAATGAG 
    TTGTGAAAAA CCATGATCAC TTCGTACGGT TTTATTTCAT ACAAATTTTA 
    TTACTGTGCT

    Gene models with high sequence identity

    1. AT3G47700.1 [+] show detail - RINT-1 / TIP-1 family
      E-value: 0; Score: 717.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RINT-1/TIP-1 1.9e-146
    ProfileScan RINT-1/TIP-1 100.858
    HMMPanther RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1) 3.9e-66

    See the detailed result >

    AT3G47700.1

    Model type
    Protein coding
    Short Description
    RINT-1 / TIP-1 family
    Curator Summary
    Involved in transportation of seed storage proteins from the ER to the vacuole. Mutant seed cell accumulates the precursors of 12S globulin and 2S albumin instead of the vacuolar-located mature proteins.
    Computational Description
    maigo2 (MAG2); CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT1G08400.1); Has 297 Blast hits to 297 proteins in 143 species: Archae - 16; Bacteria - 48; Metazoa - 107; Fungi - 71; Plants - 47; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR