K31828

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31828

Determination of introduced cDNA(s)

  • J033073B17 - Rice Full-length cDNAs - Original: J033073B17

    full reading [+] show sequence

    Nucleotide sequence: J033073B17 - full reading
    GGACGGTTTC AGGACTCGGC CGCATCCCTC CTCGCCCACT CTCCCTCACG 
    GGACACCTGC GGGGCTCGCC GACAACATGA ACAAGAACGC CGCACCGGAA
    GACGTCGAGA GCGGCGAGCA CGAGCGGACA GGGACGGTAT GGACGGCGAC
    GGCGCACATT GTTACGGCGG TGATCGGCTC CGGCGTGCTG GCGCTGGCGT
    GGAGCGTGGC GCAGCTGGGT TGGGTGGCCG GGCCGCTCGC CCTCGCCGGC
    TTCGCCTGCG TCACCTACTA CACCTCCACT CTGCTCGCCA ACGCCTACCG
    CGCGCCGCAC CCCGTCACCG GCACCAGGAA CCGCACATAC ATGGACGCCG
    TCAGATCATA CCTCAGTCCT AGAGAGGTGT TCATGTGCGG AATCGCGCAG
    TACGTCAACC TGTGGGGCAC CATGGTCGGC TACACAATCA CCGCAACCAT
    AAGCATGGTC GCGATCAGGA GGTCGGATTG CATCCATCGG AACGGCGCCG
    GCGCCGCCGC GCGGTGCGAC AACACGTCGG CGACGGTGCT CATGCTGGCG
    TTCAGCATCG TGCAGGTGGT GCTGTCCCAG TTCCCGGGCC TGGAGCACAT
    CACCTGGCTG TCCGTCGTCG CCGCCGTCAT GTCGTTCGCC TACTCCTTCA
    TCGGCCTCGG CCTGTCCGTG GCGGAGTGGG TGTCGCACGG CGGCCACCTC
    AGCGGCAGGA TCCAGGGCGC CACCGCGGCG TCCTCCAGCA AGAAGCTCTG
    GAACGTACTG CTCGCACTGG GGAACATCGC CTTCGCCTAC ACCTTTGCAG
    AAGTGCTAAT TGAGATCCAG GACACACTGA AACCGTCACC ACCGGAGAAC
    AAGACCATGA AGAAGGCAGC GATGTACGGG ATTGGAGCCA CCACCATCTT
    CTACATCTCC GTTGGCTGCG CCGGGTACGC CGCGTTCGGT TCAGATGCTC
    CGGGCAACAT CCTGACGGCG TCCGGTATGG GGCCCTTCTG GCTCGTCGAC
    ATTGCCAACA TGTGCCTCAT CCTCCATCTC ATCGGAGCAT ATCAGGTTTA
    TGCACAGCCC ATATTTGCGA CAATGGAGAG ATGGATCTCC TCCCGGTGGC
    CGGAGGCCAA GTTCATCAAC AGCGAGTACA CCGTAAACGT GCCGCTGATC
    CAGCGAGGAT CGGTGACCGT GGCGCCGTAC AAGCTCGTCC TCCGGACCGT
    CGTAGTCATC GCGACGACGG TGGTGGCGAT GATGATACCG TTCTTCAACG
    CGGTGCTGGG GCTCCTCGGC GCCTTCAGCT TCTGGCCACT GACTGTTTAC
    TTCCCCATCA GCATGCACAT TGCGCAGGAG AAGATCACCA GGGGAGGGAG
    GTGGTATCTC CTGCAAGGCC TGAGCATGGT GTGCTTGATG ATCTCGGTGG
    CAGTGGGCAT TGGCTCTGTC ACTGACATTG TTGATAGCCT GAAGGTTGCA
    ACCCCTTTCA AAACTGTCAG CTAAAAGCAG TGCTGCAGTA TATTGTAGAA
    CAGTGACAAA CAGAAAACAG CTACGAGTTG TACAACAATG TAGGATTCTG
    GACTCTGATT CTGTGTCTCT GTGTATCAAT TTTCTCGGAT ATCCGGCCGG
    TTCCTGAAAG ATTTGGAACT CTGAACTTTG CTGGATCAGC TATATTGACA
    CATTAGGTTG TTCCTATCTG ATTAAACAGG TCGGAACTTG GAACATAGCA
    GAAAGAGGTT GGAATATGTA GTAGTATTGG AATAACCTGT ACAACGGCCT
    TTGCCTTTTA GT

    Gene models with high sequence identity

    1. AT1G10010.1 [+] show detail - amino acid permease 8
      E-value: 3e-135; Score: 479.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AMINO ACID TRANSPORTER 3e-81
    HMMPfam Amino acid transporter, transmembrane 5.6e-96

    See the detailed result >

    AT1G10010.1

    Model type
    Protein coding
    Short Description
    amino acid permease 8
    Curator Summary
    Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity.
    Computational Description
    amino acid permease 8 (AAP8); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 1 (TAIR:AT1G58360.1); Has 2959 Blast hits to 2943 proteins in 246 species: Archae - 0; Bacteria - 24; Metazoa - 771; Fungi - 529; Plants - 1378; Viruses - 0; Other Eukaryotes - 257 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR