K31850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31850

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31850

Determination of introduced cDNA(s)

  • J033046O11 - Rice Full-length cDNAs - Original: J033046O11

    full reading [+] show sequence

    Nucleotide sequence: J033046O11 - full reading 
    GATTCAACAT CTCTCTCTCT CTCTCTCTCT CTCTGAACGA TGGTTGGTGT 
    GCTTGCTGCT GCTGAGCACT GATGCAGCCT TTTCTTATGG GCATTTAATA 
    CCTGAGTTAT TACTGCAAGG GAGGGAGGGA TCAAATGCAG GCAGTTCAAT 
    AGAAAAAGAA AAAAAAAGAA ACAACCTGAG CACCAGAGTT CTTGGCTGCT 
    CCAAGTTCGC ATTGTGATCC ACGGAGCCGG AGAAGGGGGC AAAACAAAAC 
    CTTATGGTTT CTTGATTCAT TTCTGCTTTG GTGATTGATT CTTGGTTCCG 
    TTTCTTGGGC CCCGATTTGG GAGGGGTTCT TGGCGATGAG GAGGCATGGG 
    TGGCAGCTAC CTTACCACCC TCTTCAGGTG GTGGCGATAG CGGTTTTTCT 
    GGCACTGGGT TTTGCGTTCT ATGTGTTCTT TGTGCCATTT GTGGGGAGGA 
    GTGAGCTCCA GTATGTGCTC ATGGGTCTCT ACACTCCACT GATTACTTGT 
    GTTGTCACAT TATACATATG GTGTGCAGCA ACTAATCCTG GTGATCCAGG 
    CATTTTTAAA GCAAAGAAAC ATCCAAAATT AGGCAAGGAT GGAAAGCAAA 
    TACAAGAAAT TTCAGAGCAC GAATCATGCC AGGGAGGAAA GTCGTTCAGC 
    GATGGCTGTA GCATTGTTAA TAACAGTGAG AGATTAAGCA ATATGTTTGA 
    AGGGAATGAT TCATCTTCTC GGCCTGGGTT ACATGGAGTT CTTTGCTTGA 
    TATGCAACCC ATTCTTCTGC TTATGGAAAA GATTCTTTCA CTCAGATGAC 
    CAATCTTCGG AACAGCACAT GAGCGAAGAA GGCATGTTCT TTTGCAGCTT 
    ATGTGAAGTA GAGGTGTTGC AGCATAGTAA GCATTGTAGA GTTTGCGACA 
    AGTGTGTTGA TGGTTTTGAT CACCACTGCA GGTGGCTCAA TAATTGCATA 
    GGAAAAAGAA ACTACAAAAG ATTCTTCATT CTAATGGCTT CAGCTGTTCT 
    CTTGCTTATA ATGCAGTGGT TAGTGGGCAT TCTTGTGCTG ATACTCTGTT 
    TACTGAAGCG AGGGGAGTTC TCCGGACAGA TGATCTCAAA GTTAGGAAGT 
    AGCTTCTCAA CAGCTGCTTT TGTAATTGTT GTGATGACAT GTACTTTACT 
    AGCAATGCTT GCAACAATAC CCCTTGCCCA ACTTTTCTGC TTCCATGTTC 
    TGCTTATTAA GAAAGGCATA AGTACGTATG ATTATATTGT AGCTTTGAGA 
    GAACAAGAAG AGCAGCAAGA GGTTACTGAG CATCAAAGCC CGCAGATGTC 
    TATTATTAGC TCTGTGACAG GGTTTAGCAC AACTAGCTCA TTTGCTCCTC 
    TTCAACGTGG GTCATGGTGT ACTCCGCCAC GTTTATTCCT TGAAGATCAG 
    CATGTCATTC CCCCAGAAAT GCCACAGAAC TCCTCAAGCA AGAAGGCAAA 
    GCATGCTGAT GTAACCAAAC GAAAACCATC AGGACCTGTG AAAATCAGTC 
    CCTGGACACT AGCTCGCCTT AACGCGGAGG AAGTTTCGAA GGCAGCTGCA 
    GAGGCGAAAA AGAAGTCCAA AGTTCTTCAG CCAATCGCGA GACATGAAGA 
    TCCTAAACAT GACAAGAGGC GACCCGACAA GAGAGGGCAG TTTCTACCTG 
    AACTTTCCGT CGATCACACT ACGAGGACAT CTGATAGCTG CACCGACAGC 
    AACTGCAGCG ACATGGACAT GGAAACATGT GGCAGTTTAG CCCCATTGCA 
    ACATGAAGTG AGGAGCGTTT TCCAACCAAG CATCGCATCG TCGATCAGAA 
    ACCTCACCTC ATCACCTCAG AGCAGCCTGG ACTCACCTGA TCTTCACCCA 
    TTCCGTGTTT CAATGTCAGG AGCAGACGAA CTCCGCAGTT TCATGTCACT 
    CGCAGCATCA GAATCCACTG CTCCAAAAAG CATTGCACTT TCAAGGTCGA 
    CGAGTGGTGG GTACGAGGCC TCGGGAGGCG AGGAAAGTGA TCGCATCCCG 
    TCAAAGATCG TGCACCGGTC GTCCAATTGG GCCAATGCCA TCCTCAATTC 
    CGGTAGGCGA GAAATGGCAG CCGATCTGAA CTTGCCAACA TCTGAAAGAT 
    TTCTTACAAA CACCAGGTTT AGCTAGCTAG TCATTTGCTG TGCTGCTAGT 
    TGTGAATGGG CTGTAGGATT TACTGACCTG TTACTGGTTA GAAGTAGTAG 
    TGTTGTTGCA ATTGTGACCA ATATCTGTTC CAGCCAAGAC AATTGCCTCA 
    TATTGGGTTT AGCTGCTGTA CTGCTCTAAT TTGCTCTCTT GCACTCAGTT 
    TTGTACTCTC CGTGCTCAAC CTGCATGGTT GACCATGGGA TACATTTGAC 
    GGATGGCATT CTTTCAACAG TTTGTTTTGC TAGAGCCCCT TTTTCATATG 
    CAAAATTTAG ACACCC

    Gene models with high sequence identity

    1. AT1G69420.2 [+] show detail - DHHC-type zinc finger family protein
      E-value: 6e-125; Score: 445.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, DHHC-type 22.013
    HMMPfam Zinc finger, DHHC-type 1.2e-20
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 3.2e-50

    See the detailed result >

    AT1G69420.2

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G15080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR