K31851

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31851

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31851

Determination of introduced cDNA(s)

  • J033108B21 - Rice Full-length cDNAs - Original: J033108B21

    full reading [+] show sequence

    Nucleotide sequence: J033108B21 - full reading 
    GGTCGTCCAC CTCCGACCGA CGGCTATGAA GGCCGCCGCC TCCCCGCTCC 
    GCGCCGCCCT CCTCCTCTTC CTCTCCTCCT CGCCGTCCCC GCGTCTCGCG 
    CTCCCCATGA ACCCCTCCTC CTCCTCCTCC TCCCGCGGCG CCGCCTCCTG 
    CACTCCAAGG CCGCCGCCTT CGCCTCCCCG CAGCCTCGCG GCGGCGGCGG 
    CGGCCGAGGG GGGCGACGCG GCGGCGGAAG AGGCCGCGGC GGCGATGGGA 
    GCGACCGCAT CGACGCCCTC GGCCGCCTCC TGACGCGGAT CTTGCGGCAC 
    ATGGCGTCGG AGCTGAACCT GGAGATGAGG ACCGACGGCT ACGTGCGGGT 
    CCGCGACCTG CTCAAGCTCA ACCTGCAGAC CTTCGCCAAG ATCCCTCTCA 
    AGTCCCACAC CGTCGACGAA ATCAAGGAGG CGGTTAGACG GGATAACAAG 
    CAGAGGTTTG GTCTGTTGGA GGAAGATGGT GAGCTGCTGA TTCGAGCTAA 
    CCAGGGCCAC ACAGTAACGA CTGTTACTTC AGAGAGCTTG TTGAAACCCA 
    TTCTATCAGC AGATGAAGTC TCTGTTTGTG TGCATGGAAC ATACAGGAAG 
    AACCTCGATT CAATCTTGCA TCAGGGGCTA AAACGAATGG CAAGGTTACA 
    TGTACATTTC TCAAGTGGCT TACCGACAGA TGGGGGAGTT ATTAGCGGTA 
    TGCGGCAGAG TGTTAACATC TTGATATATT TGGATGTCAG TATGGCACTG 
    CAAGATGGAA TGAAGCTGTA CATTTCAGAC AACAAGGTGA TTCTGACAGA 
    GGGTTTCGAT GGCGTTGTTC CTGTGAAGTA CTTCGAGAAA ATTGAAACAT 
    GGCCAGGGAG AGCACCGATA CCATTTGAAA AATAGAGAAC ACTGTTGTAA 
    TTTTGCTCAT GCGTATAGCG ATCTACTTCT TCAGTTCATG GGAATTGTGC 
    CCTGAAAGGC CGAAAGAAAT GTAATTTTGC AAACAAGTTT AGGTTATGCT 
    CGTTTGAGAA ATGGAGAGGT AGACATTGTT GTGAAGCTTC AGTAAGCTGT 
    TCTTAATGTT GATTGGGTCA ATGGCTCCTC CAGTTTATCC AATTCCATCT 
    TTGCAGTTAC TACTAATCTT GTAACTGAGT ATATTGCAAT ACACAATTGG 
    CTACGACTGA CGATTTATGT CG

    Gene models with high sequence identity

    1. AT2G45330.2 [+] show detail - RNA 2'-phosphotransferase, Tpt1 / KptA family
      E-value: 7e-88; Score: 321.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G45330.2

    Model type
    Protein coding
    Short Description
    RNA 2'-phosphotransferase, Tpt1 / KptA family
    Computational Description
    embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation, embryo development ending in seed dormancy; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT5G23600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR