K31907

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31907

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31907

Determination of introduced cDNA(s)

  • J013063G04 - Rice Full-length cDNAs - Original: J013063G04

    full reading [+] show sequence

    Nucleotide sequence: J013063G04 - full reading
    GGGGGGAAAA GCAATGGCGG AAGTAAGAAC TATTGGGTCT CTCCCAGTGC 
    CTAATGTGCA GGCACTTGCA GGAACTTGCA ACGGTTCAGA CGAACAGATT
    CCTGAAAGGT ACATCAGGAC AGAGGCTACT TGTGAGGAGG TCATCAGCAA
    CTACCATGGT GACATGGCGA TTCCAATCAT TGATCTCAAT AAGTTGCTTT
    CTCCACAATC ATCAGAAGAA GAGTGTGTGA AGCTGAGATC TGCCTGCCAG
    TATTGGGGAT TCTTTCAGCT CATCAACCAT GGAGTGCCAG AGGAAGTGAT
    TGAAAACTTC AGGAGCAACA TTATTGAGTT CTTCAGCCTG CCACTGGATG
    CCAAGAAGGA GTACTCACAG CTGCCCAACA GCCTTGAAGG CTATGGACAG
    ACCTTTGTTT TCTCTGAGGA CCAGAAACTA GACTGGGGAG ACATGTTGTA
    CCTTCAAGTC CATCCTACCG ATTCAAGGGA CTTGAGATTT TGGCCAGTCA
    CCCTGCATCT TTCAGGCAAT CCCTTGATCA ATACTCATCG GAGACTAAAA
    GCCTGTCGCT CTGCTTGTTT GAGTTCCTGG CTAAGGCCGT GGGTGCTGAG
    CCAGAGTCGC TGTTAGGCAT CTTTGAAGAG CAGCCTCGAG GAATGAGGAT
    GAACTACTAC CCACCATGCC GGCAATCTGA CAAAGGTAAT TGGCCTGTCG
    CCGCACACCG ATGTGGTTGG CCTGACGCTG CTGCTCCAGG TGAACGATGT
    TCAGGGTCTG CAGATCAAGA GGGATGGCAA GTGGTTCTCC GTGGATGCTC
    TGAGTGGCGC ATTCATCGTC AACATAGGGG ACACACTTGA GATCCTGAGT
    AACGGAAAAT TCAAAAGTGT TGAGCACAGG GCCATGATAC ATCCAAATAA
    GGAGCGGATT TCAACGGCAC TATTCCACTA TCCGCGCGAT GATCTGCTGC
    TGAGCCCTCT GCCTGAGTTT GTGAAAGATG GTAAAGTGAA TTACAGATCA
    ATCAGTTACA ATGATTTCAT GATGCAGTTT TTTAATCAAA AGCGTGATGG
    AAGGAATCGG CGGAGAGATT AAAGTTGGAA CAGTAGCCAT CGACTATGAT
    GCCTGAGATA CTCTCTGAAA TGAGCATGCT TCTGGGTTGT GTCCTACATA
    TATATTTCTT ACTGTATGTA CTATCTGGAG ATCACAAATA ATGAAATAAC
    CATATCTTAT GATG

    Gene models with high sequence identity

    1. AT1G17020.1 [+] show detail - senescence-related gene 1
      E-value: 3e-57; Score: 219.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Clavaminate synthase-like 3.4e-09
    superfamily Clavaminate synthase-like 1.2e-31
    superfamily Clavaminate synthase-like 5.3e-43
    Gene3D no description 3.6e-06
    Gene3D no description 6.6e-30
    Gene3D no description 2.6e-38
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.6e-21
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 1.3e-61
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 1.3e-61
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 2.4e-27
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 2.4e-27
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 1.1e-76
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 1.1e-76

    See the detailed result >

    AT1G17020.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 1
    Curator Summary
    Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.
    Computational Description
    senescence-related gene 1 (SRG1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G17010.1); Has 8560 Blast hits to 8517 proteins in 996 species: Archae - 0; Bacteria - 1133; Metazoa - 115; Fungi - 988; Plants - 4970; Viruses - 0; Other Eukaryotes - 1354 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR