K31909

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31909

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31909

Determination of introduced cDNA(s)

  • J023021H04 - Rice Full-length cDNAs - Original: J023021H04

    full reading [+] show sequence

    Nucleotide sequence: J023021H04 - full reading 
    GTCCCTTCCA ACGCCGGCCA CTCGTCTCCT CCTCCTCCCA CCTCCCGTTT 
    CCCCCGCGCC ATCCTCCTCC GCCTCGCCGC CATGGCCGCG ACCCCGCCGT 
    CGTCGCAGCA CCGGCGGCCG CTGTCCTCCT CCGCCTCCGC CGCCTCCCTC 
    GCTGGCAAGC CGCGGGGGGG CGGGCTCCTG CTCGGGCGGT ACGAGCTCGG 
    CCGCCTCCTC GGCCACGGCA CCTTCGCCAA GGTGTACCAG GCGCGGAGCG 
    CGGATTCCGG GGAGCCGGTC GCGATCAAGG TGCTCGACAA GGAGAAGGCG 
    ATGCGGCACG GCCTCGTCCC GCACATCAAG CGGGAGATCG CCATCCTCCG 
    CCGCGTCCGC CACCCCAACA TCGTGAGGCT GTTCGAGGTG ATGGCCACCA 
    AGTCCAAGAT CTACTTCGTG ATGGAGCTCG TCCGCGGCGG GGAGCTGTTC 
    GGCCGCGTCG CCAAGGGGCG GCTCAAGGAG GACACCGCGC GGCGCTACTT 
    CCAGCAGCTC GTCTCCGCCG TCGGGTTCTG CCACGCGCGC GGCGTGTTCC 
    ACCGCGACCT CAAGCCCGAG AACCTCCTCG TCGACGAGCA CGGCGACCTC 
    AAGGTCTCCG ACTTCGGCCT CTCCGCCGTC GCCGACCAGT TCCACCCCGA 
    CGGCCTCCTC CACACCTTCT GCGGCACGCC CTCCTACGTC GCGCCCGAGG 
    TGCTCGCGCG CCGCGGCTAC GACGGCGCCA AGGCGGACAT ATGGTCCTGC 
    GGCATCATCC TCTTCGTGCT CATGGCTGGC TACCTTCCGT TCCATGACCA 
    GAATCTCATG GCCATGTACC GAAAGATTTA CAGGGGGGAA TTCCGGTGCC 
    CGAGATGGTT CTCCAAGGAT CTTTCCAGTC TACTGAATCG CATCCTTGAC 
    ACGAACCCAG AGACAAGGAT CACTGTCAAA GAGGTCATGG AGAGCAGGTG 
    GTTCCAGAAG GGATTCCGGC CGGTCAGATT CTATGTTGAG GATGATCAGG 
    TTCACAGCTT GGCAGATGGT GATAATGATA TGCCGGAGTT GGAACCTAGT 
    GAGCCTCCTC CTCCTCCTCC GTTTCCGCCG CCGCCGCCGC AGCAAGATGA 
    TGACGGTGAG GAGTCGGGAT GGGAGTCGGA CTCATCCGTG GCATCATGTC 
    CTGCCACATT GTCATCTGAG GAGCGTCGGC AAAGACCTCT CGGGTCTCTC 
    ACACGGCCAG CAAGTCTTAA TGCGTTCGAT ATCATATCGT TCTCAAAGGG 
    ATTTGATTTG TCGGGGTTGT TTGAGGAGCG AGGGAGTGAA GTGAGGTTCA 
    TATCGGCAGA GCCTATGCAA ACAATCATCA CAAAATTGGA GGAGATCGCA 
    AAGGTGAAGA GCTTCTTCGT TCGGCGAAAA GACTGGCGAG TGAGCATAGA 
    AGGCACGAGG GAAGGTTTGA AGGGTCCATT GACAATCGGC GCTGAGATAT 
    TTGAGCTCAC ACCAAGCCTG GTGGTAGTGG AGGTGAAGAA GAAGGCAGGG 
    GATAAGGAAG AATATGATGA CTTCTGTAAC AGGGAGTTGA AACCTGGGAT 
    GCAGCATCTC GTACACCATA TGGGATCAGT TCCAAATATA CCTTCTGATA 
    CGGAGTAGTT TGAACTAAGA AAGGTAGTTC TCTTTCTTGG AGGGGTATAA 
    GGAAATTTTG GATTAAAAGT ATATGTCTAT GCAAGCATGA ACACCTGAGA 
    GGCAAAATGA TACCCAATTC CTTTAGACCA GTGTCCATGT TTTGGTGCTG 
    TTCGTTTCTT CAATCGAAAT GATGTATGCT AGTGTTTGCA TGCTAATATC 
    AGCTATCAAA TGTCTGTTTT TAGCTGTTAC AGTTTAAAGA GAGTGACAAA 
    TCTGAGTATA TGGCATCAGT ATCAATGAAG TGGACTAGAC TTTTATGTAT 
    GCCGCAGCAG TGCAGCCATT TGTATTTCTA TGCTGCCAGT TAGTTCTCTG 
    AATACATATG ACATCAACAC TG

    Gene models with high sequence identity

    1. AT4G18700.1 [+] show detail - CBL-interacting protein kinase 12
      E-value: 2e-168; Score: 589.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 5.7e-65
    HMMSmart Serine/threonine-protein kinase domain 4.3e-106
    HMMSmart Tyrosine-protein kinase, catalytic domain 8.8e-12
    superfamily Protein kinase-like domain 3.6e-92
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPanther CBL-interacting protein kinase 9.6e-227
    HMMPanther Calcium/calmodulin-dependent protein kinase-like 9.6e-227
    HMMPfam Serine/threonine-protein kinase-like domain 1e-73
    HMMPfam NAF domain 6.7e-22
    ProfileScan Protein kinase, catalytic domain 52.428
    ProfileScan NAF/FISL domain 14.494

    See the detailed result >

    AT4G18700.1

    Model type
    Protein coding
    Short Description
    CBL-interacting protein kinase 12
    Curator Summary
    Encodes CBL-interacting protein kinase 12 (CIPK12).
    Computational Description
    CBL-interacting protein kinase 12 (CIPK12); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 19 (TAIR:AT5G45810.1); Has 132740 Blast hits to 130588 proteins in 4556 species: Archae - 205; Bacteria - 15732; Metazoa - 48597; Fungi - 13262; Plants - 32355; Viruses - 523; Other Eukaryotes - 22066 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR