K31910

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31910

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31910

Determination of introduced cDNA(s)

J033082I06 - Rice Full-length cDNAs - Original: J033082I06

full reading [+] show sequence

GCCTCTCCGC TGCGCTCCCT TCCCAGCCGG CGGCGCCAAC TTTAGTAGCC 
GCAGGCCGCA GCCGCCCACG AACCGCCGGC GACGAGATCC GAGAGGAGGC 
TGGCCGGGGC TGTCGATGGC GTCGTGGTGC GGCGACCTGG CTGCGCCGCC 
CCGCCTCCTC GTCGCCCCTC GTCCTTCTGA TGGCAATTGT CAAGGGAATG 
TTTTGTCTCT CCGCCACCCG AGATCAGATG AAGAAACAGG GTATCTGTTC 
ATCGACGGTC AACTTCACGA GTTCAATTGG TTTAAGGAGC GATTTGGATC 
TTGGTTCTTG GGTGATTATG TTTGTGAAGA TGGCAGCCTC TACTACTGCA 
CAGTTGTTGA TCCCATTTTT ATTCTTCTAC CAATTTTGAA AGCTGCACGT 
ATGTCGGTAT GCCAAATCAA ATCAGAAATA TTTCTAATAT GAGGTTCACA 
TTCAACATAT TTGCCTGTTG AAAATTTGAA AAGCTAGTCC CTCAACAGCT 
TTACTGTGCT GCAGAATGGT AAAGATCCAG GAAAATTTAG GCAACTGGAT 
GAAATATTGT ATGTTGAAGG ATATCCTGGA TATCAACACC TCATGGGTAT 
AGCAGGAAAC CATATTGATC TGGTCTGTGA AGTTAAAGAA GTTGCTAATG 
TGAAGTTCTT TAGGCTGGAC GATTCCAAGG TCTTATCTTG GTTGTGCTGT 
AAGGTTAGCT TGTGTCAGTA ATTACATCTA CTAACTCGAT TTGCACTATG 
CTATTCCGCT GATACTTATT CTTATCAGAA GCTAACCCAC CTTTTATCTT 
TACTTGTCCT TTTCATATTA CAAAAGCAAG GATCTAACAT GAAGTTAGGG 
TGGAATGTTG CTTATGTGGG TTAGGAAAAG AGGCATCTTA TTGTTTTTAG 
ACTGTTTGCC TTGAATAAGG ATGCAACAAT CCAACAAACT GAGCACAACA 
TTGAGAATGT TGATGGGCTA AAACTTAATT CTTCCACACC ATGTTTTAAT 
TTATATTTGT ATATAAACTA TGTGCACCAA ACATTAGTCT TTAAGTTCAC 
TTTGGTTTTG AAGATGATAA ATAAAGCATG AATTGGGACC CTAGTGAATT 
TCCTATATAT TTAAGAACAT GAATGCACAT GGTCATTCTT GTAAACGTCC 
CTAAATAGGT GTCAGAGGGT AGTGGCTGCT ATTCCTTGAC TGCTGTTTGT 
AGCATTCTGC CTACCTTATG TTACAACCTT CTACAACCAT TATAATGTAC 
GGTGTGTTCC AGTACTGTTT ATTTGTTGCA TATTTCCTGC CATTTTCCAG 
TTGAACAATT TTACTTCATA AATTTCATTT AACTATGTTC TTGCAAAAAT 
ATAGCTAGCA TGTGTTGTGC CCACTATAAC ACCACTGCTA TCTGCTGTAC 
CAACACTTTG CCACATGCTA CATGCAACTC AAAACATCAT ACAATATTTT 
TGCATGATTA ACCTAGTAAT GGCTATTGTT ATCTGCAAGA AACAAATGCC 
ACTTTGGGAT ATCACTTAGA TTTTTTAAAA AATTATGCTG CCTTGCAAAT 
TCAAAATAAC AGTTTGTCTT GGTAGCATCA TGAGAACATA CCAGTTCATG 
TGCCCTCATA ATTTATGTTT TGATACGTCC TTTAGCTGTA CTTAATATTC 
ATGCCTGTGA ATTTCGAATC ATATTGATCT CACTTCACTT GTTACTCTGT 
AGTTTCGAAA ATACTCTTAT GAATCTCATA TACAGGTTCA CAATCTAAAA 
GAGGTTTTCC CCAAGCTAGG CAAAAATTAT GCTGCCCAAG GAGAAAAAGA 
ATTATTGAAG GATGCCGTCC AAATAATTCG CGAATACCTG AACGACGAAC 
CATGGTTAAC GTTACTCTGC AAGAAGTTGC AGTTGGATAT CAAGGAGATC 
ATTGAAGCGA ACAAAACTAG CGAAGCTTCC TTCTGTGCAG AGAATTCTCC 
TGTACCTTTC CACCCTGCTG AGGAGAAGCT TGGAAGTAGT AGCACTAGGT 
CAAGCAAAGG GAGGCCAGCA AAGAAACAAA AGGCTGAGGT AGAATCGAAG 
AACATCAAAG ACATGTTCCG GAGGGTCACA AGGAAAGGAA CGTGATCCCA 
TATTATTTAT AGTATGACTT GGTTCTGATT TCGCCATCGA GACCTCGCAA 
GGCGCTTCAT ATTATTGAGG GAAAGCTGAG GTTTTCAGAT TAAAGCATTG 
TTTATGCTTC AGAAGCATTC GTGCAGCTAA TGGAATTAAC TGTTTAACAA 
ATTTACTCCA AGTCTCAACT TTGTTAGGTT TGAAATGTAG CATTGCAGGC 
GTGTATTTAA GTATTTGAGC AAAGAGTCTT GTACTATCCT ACTGATTTGT 
ATCGTACCAA CCAATTTCCT TGAACATCTT GGCCTTGGGT CACTAGAGTA 
ATCTGAAATG GTTGTTAATG TTATTTGTGA GCTTCAACAC TTCCTATTTG 
AGAACATTTC TAAGTTGTTC CG

Gene models with high sequence identity

AT4G20325.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nu...
E-value: 5e-42; Score: 170.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Ribonuclease H2, subunit B	0.059
HMMPanther	SUBFAMILY NOT NAMED	0.000000000011
HMMPanther	FAMILY NOT NAMED	0.000000000011
HMMPanther	FAMILY NOT NAMED	0.000021
HMMPfam	Ribonuclease H2, subunit B	4.2e-22
HMMPfam	Ribonuclease H2, subunit B	0.00000000000046

See the detailed result >

AT4G20325.1

Model type: Protein coding
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR