K31910

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31910

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31910

Determination of introduced cDNA(s)

  • J033082I06 - Rice Full-length cDNAs - Original: J033082I06

    full reading [+] show sequence

    Nucleotide sequence: J033082I06 - full reading 
    GCCTCTCCGC TGCGCTCCCT TCCCAGCCGG CGGCGCCAAC TTTAGTAGCC 
    GCAGGCCGCA GCCGCCCACG AACCGCCGGC GACGAGATCC GAGAGGAGGC 
    TGGCCGGGGC TGTCGATGGC GTCGTGGTGC GGCGACCTGG CTGCGCCGCC 
    CCGCCTCCTC GTCGCCCCTC GTCCTTCTGA TGGCAATTGT CAAGGGAATG 
    TTTTGTCTCT CCGCCACCCG AGATCAGATG AAGAAACAGG GTATCTGTTC 
    ATCGACGGTC AACTTCACGA GTTCAATTGG TTTAAGGAGC GATTTGGATC 
    TTGGTTCTTG GGTGATTATG TTTGTGAAGA TGGCAGCCTC TACTACTGCA 
    CAGTTGTTGA TCCCATTTTT ATTCTTCTAC CAATTTTGAA AGCTGCACGT 
    ATGTCGGTAT GCCAAATCAA ATCAGAAATA TTTCTAATAT GAGGTTCACA 
    TTCAACATAT TTGCCTGTTG AAAATTTGAA AAGCTAGTCC CTCAACAGCT 
    TTACTGTGCT GCAGAATGGT AAAGATCCAG GAAAATTTAG GCAACTGGAT 
    GAAATATTGT ATGTTGAAGG ATATCCTGGA TATCAACACC TCATGGGTAT 
    AGCAGGAAAC CATATTGATC TGGTCTGTGA AGTTAAAGAA GTTGCTAATG 
    TGAAGTTCTT TAGGCTGGAC GATTCCAAGG TCTTATCTTG GTTGTGCTGT 
    AAGGTTAGCT TGTGTCAGTA ATTACATCTA CTAACTCGAT TTGCACTATG 
    CTATTCCGCT GATACTTATT CTTATCAGAA GCTAACCCAC CTTTTATCTT 
    TACTTGTCCT TTTCATATTA CAAAAGCAAG GATCTAACAT GAAGTTAGGG 
    TGGAATGTTG CTTATGTGGG TTAGGAAAAG AGGCATCTTA TTGTTTTTAG 
    ACTGTTTGCC TTGAATAAGG ATGCAACAAT CCAACAAACT GAGCACAACA 
    TTGAGAATGT TGATGGGCTA AAACTTAATT CTTCCACACC ATGTTTTAAT 
    TTATATTTGT ATATAAACTA TGTGCACCAA ACATTAGTCT TTAAGTTCAC 
    TTTGGTTTTG AAGATGATAA ATAAAGCATG AATTGGGACC CTAGTGAATT 
    TCCTATATAT TTAAGAACAT GAATGCACAT GGTCATTCTT GTAAACGTCC 
    CTAAATAGGT GTCAGAGGGT AGTGGCTGCT ATTCCTTGAC TGCTGTTTGT 
    AGCATTCTGC CTACCTTATG TTACAACCTT CTACAACCAT TATAATGTAC 
    GGTGTGTTCC AGTACTGTTT ATTTGTTGCA TATTTCCTGC CATTTTCCAG 
    TTGAACAATT TTACTTCATA AATTTCATTT AACTATGTTC TTGCAAAAAT 
    ATAGCTAGCA TGTGTTGTGC CCACTATAAC ACCACTGCTA TCTGCTGTAC 
    CAACACTTTG CCACATGCTA CATGCAACTC AAAACATCAT ACAATATTTT 
    TGCATGATTA ACCTAGTAAT GGCTATTGTT ATCTGCAAGA AACAAATGCC 
    ACTTTGGGAT ATCACTTAGA TTTTTTAAAA AATTATGCTG CCTTGCAAAT 
    TCAAAATAAC AGTTTGTCTT GGTAGCATCA TGAGAACATA CCAGTTCATG 
    TGCCCTCATA ATTTATGTTT TGATACGTCC TTTAGCTGTA CTTAATATTC 
    ATGCCTGTGA ATTTCGAATC ATATTGATCT CACTTCACTT GTTACTCTGT 
    AGTTTCGAAA ATACTCTTAT GAATCTCATA TACAGGTTCA CAATCTAAAA 
    GAGGTTTTCC CCAAGCTAGG CAAAAATTAT GCTGCCCAAG GAGAAAAAGA 
    ATTATTGAAG GATGCCGTCC AAATAATTCG CGAATACCTG AACGACGAAC 
    CATGGTTAAC GTTACTCTGC AAGAAGTTGC AGTTGGATAT CAAGGAGATC 
    ATTGAAGCGA ACAAAACTAG CGAAGCTTCC TTCTGTGCAG AGAATTCTCC 
    TGTACCTTTC CACCCTGCTG AGGAGAAGCT TGGAAGTAGT AGCACTAGGT 
    CAAGCAAAGG GAGGCCAGCA AAGAAACAAA AGGCTGAGGT AGAATCGAAG 
    AACATCAAAG ACATGTTCCG GAGGGTCACA AGGAAAGGAA CGTGATCCCA 
    TATTATTTAT AGTATGACTT GGTTCTGATT TCGCCATCGA GACCTCGCAA 
    GGCGCTTCAT ATTATTGAGG GAAAGCTGAG GTTTTCAGAT TAAAGCATTG 
    TTTATGCTTC AGAAGCATTC GTGCAGCTAA TGGAATTAAC TGTTTAACAA 
    ATTTACTCCA AGTCTCAACT TTGTTAGGTT TGAAATGTAG CATTGCAGGC 
    GTGTATTTAA GTATTTGAGC AAAGAGTCTT GTACTATCCT ACTGATTTGT 
    ATCGTACCAA CCAATTTCCT TGAACATCTT GGCCTTGGGT CACTAGAGTA 
    ATCTGAAATG GTTGTTAATG TTATTTGTGA GCTTCAACAC TTCCTATTTG 
    AGAACATTTC TAAGTTGTTC CG

    Gene models with high sequence identity

    1. AT4G20325.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nu...
      E-value: 5e-42; Score: 170.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribonuclease H2, subunit B 0.059
    HMMPanther SUBFAMILY NOT NAMED 1.1e-11
    HMMPanther FAMILY NOT NAMED 1.1e-11
    HMMPanther FAMILY NOT NAMED 2.1e-05
    HMMPfam Ribonuclease H2, subunit B 4.2e-22
    HMMPfam Ribonuclease H2, subunit B 4.6e-13

    See the detailed result >

    AT4G20325.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR