K31926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31926

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31926

Determination of introduced cDNA(s)

J023034A08 - Rice Full-length cDNAs - Original: J023034A08

full reading [+] show sequence

GTGGCTAAAC CCAGCCTCGC CGTCGCCGGC GACATGCTCC GCCTCTCATG 
CTGCCGGCCG ACGGCCGGCG GCGGCCTCGC CGGCGCCATG CTCCACCTCC 
TCCCGCTGCT CCGCGCCCGC GCCGCCACCC ATCTCCCCAC CTCCTCTCTG 
GACCTCAGCC GCCGCCGCCG CCTCCTCCTC TCCACCGCCG CCAGATCCGC 
CGCCGCGACC CCCTTCTCTG TCGAGGAGTA CCTCGTCGAC ACCTGCGGCC 
TCACCGGCGC CCAGGCGCTC AAAGCATCCA AGAAGCTCTC CCACCTCAGG 
TCGCCCGCCA AGCCCGACGC CGTGCTCGCC GTCCTCTCCG GCGTCGGCCT 
CTCCCGCGCC GACCTCGCCG CCGTCGTCGC CTCCGACCCG CAGCTGCTCT 
GCGCCAGGGC CGACAACATC GCCCGCCGCA TCGCCTCCCT GCGCGACCGC 
GTGGGCTTGT CGGACCCCCA GATCGGCAGC TTCCTCCTCG CGGGCGGCGC 
CAAGGGCATC CACGCGTGTG ACGTCGCCTC GAGGCTGGAG TTCTGGATCC 
CCTTCTTGGG ATCCTTCGAG ACGCTCCTCA GGATCTTGAA GGGGAACAAC 
GTGCTGGTGC TCTCTGACCT TGAGAAGGTG ATCAAGCCCA ACATCGCGCT 
GCTCCAGGAG TGCGGGCTAA CTGTTTGTGA TATTGCCAAG ATGGCCAGGT 
TTGCTCCACG GATGTTCACG TCCAATCCAA AGCAGGTGGA AGGGTTTGTG 
CGGCGTGCCG ATGAGCTTGG CGTGCCACGC ACCTCAGGCC AATTCAAGTA 
CATGGTGGGT ATTTTTGCTA ACATCAGCGA AGGCAGTGCC ACCGCGAGGA 
TGGAGTACTT GAGTCGCAGT CTTGGTTGCT CCATGGACAA GCTCCGCTCT 
GCGGTCCAAA AGTTACCACA AATTCTAGGA TTATCTGAGA CAAATCTTGG 
CAGCAAGATA GAGTTCTTGG TCGGCAAGGT CAGATTGGAG CCTGAATACC 
TTTTGAAGAC GCCAAAGCTG TTCACGTACA GCTTGGAGAA GCGGTTGGTG 
GCGAGGCATT ATATTGTGCA AGTCCTTGCT GCGAAGGGAT TGAAGGGATT 
GAAAAAAGAT GTTCCCTTTT GCTCATATGT ACAGCTAGGC GAAAGTTGTT 
TTGTAAAAAA CTTCATTGAT CAGCACGAGA ACGTTGTCCC TGGTCTTTCT 
GATGCCTATG CTGCACTTCG TGCTGGGAAA GTGCCTCCAG AGGTCCAACA 
CTGACATCTT CGGACAGAGT TATTGGAATT CATTCTGGCA GAATGCCTTC 
TGGAGTCCAA CTATAACATC TTTGGAGGTT AATTATCTTT CAAGCCCATA 
CCTCATGTTG TGAGGATCAC TAATTGGTGT GATGGTTTTC ATGCATGGTC 
ATGCCTTTTT CATATTTTGA TTTCAGTTGT AATATGAGTT GTTGCTAACT 
TGCTATTTAT GCAGCAACTT GATAGTTTAA ATCTTGATGC TCT

Gene models with high sequence identity

AT5G07900.1 [+] show detail - Mitochondrial transcription termination factor family protein
E-value: 8e-20; Score: 95.50

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Mitochodrial transcription termination factor-related	1.9e-24
HMMSmart	Mitochodrial transcription termination factor-related	46
HMMSmart	Mitochodrial transcription termination factor-related	1.1
HMMSmart	Mitochodrial transcription termination factor-related	0.047
HMMSmart	Mitochodrial transcription termination factor-related	66

See the detailed result >

AT5G07900.1

Model type: Protein coding
Short Description: Mitochondrial transcription termination factor family protein
Computational Description: Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G21150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR