K31936

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31936

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31936

Determination of introduced cDNA(s)

  • J033085E02 - Rice Full-length cDNAs - Original: J033085E02

    full reading [+] show sequence

    Nucleotide sequence: J033085E02 - full reading 
    GATTCTGCTT TCGTCTCCAG AGGTTCGTCT TCTTCTCCTT CCCCCAGCTT 
    TGCGCCTTCG CGCAGCCGCG TAATCTCGTC TGCCCTCGCT GCTGGATGTC 
    GGCGATCCGC GCCTCTTCTC ACCGGCTACA AGAACTGTGG CATTAACAAG 
    GACAAAGATG TCAAGCATGG CAGGCTTGGG AGCTTCTCAG CATGGATATC 
    CTCCCCGAAG TCATGAGCCC TGGACTAAAC TTGTACACAG AGAGAGATTA 
    CCCGAGTGGT TTGCATACAA TCCAAAGACC ATGAGGCCTC CACCACTTAG 
    CCATGATACC AAGTGCATGA AGATTTTATC CTGGAATATT AACGGGCTTC 
    ATGATGTTGT AACGACAAAG GGGTTTTCTG CACGTGACTT GGCTCAGAGA 
    GAGAATTTTG ATGTGTTATG TCTTCAAGAG ACACATTTGG AGGAAAAGGA 
    TGTTGAAAAG TTTAAGAATC TGATAGCAGA CTATGACAGC TATTGGTCAT 
    GCAGCGTCTC GAGGCTTGGC TATTCAGGGA CTGCAGTAAT TTCACGGGTT 
    AAACCCAATT TCTGTCCAAT ACGGGATTGG CATACGTGAA CATGATCATG 
    AGGGCAGGGT TATTACTCTG GAGTTTGATG GTTTTTACTT GGTAAATGCC 
    TATGTTCCAA ATTCTGGTCG TTTTCTACGT AGACTGAATT ACAGGGTCAA 
    TAACTGGGAT CCGTGTTTCA GCAACTATGT AAAAATACTG GAAAAGTCGA 
    AACCAGTGAT TGTTGCAGGA GACCTTAACT GTGCTCGTCA AAGCATTGAC 
    ATTCACAATC CTCCAGCAAA AACCAAGTCT GCAGGTTTCA CAATTGAAGA 
    GAGAGAGTCA TTTGAGACAA ACTTTTCTAG CAAAGGCCTT GTGGATACTT 
    TCAGAAAACA GCACCCTAAT GCTGTCGGCT ATACCTTCTG GGGTGAAAAT 
    CAGCGCATAA CCAACAAAGG TTGGCGATTA GATTACTTTC TTGCGTCGGA 
    ATCTATTACC GACAAGGTTC ATGATTCATA CATTCTTCCT GATGTATCAT 
    TCAGCGACCA CAGTCCAATT GGCCTGGTAC TGAAGCTATA GTATCGGCGA 
    GACTCTAAAA TTCGAGACCT TACTGAAGCC AACTGTACAT AATCACTTGA 
    CAAATGCTTA TATAAATCTT TGGCCAGCCT GAAATGTTGC AAGATGTGGT 
    AGAGTTAGTC TCCATATCCA TTTGCCAGTC AATATTACGA TTTGTTCTGT 
    CAGTCTGTCA GGTGTTCGTC CTGAGACCTT CTGTATATAA CGCGATGCAT 
    TTGTTTGCTG TCTCTGGGCC AAACTTTCAT AGGCATTTTA TCATGAAATA 
    TGATTCC

    Gene models with high sequence identity

    1. AT2G41460.1 [+] show detail - apurinic endonuclease-redox protein
      E-value: 1e-108; Score: 161.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Exodeoxyribonuclease III xth 1.6e-68
    PatternScan AP endonuclease, family 1, conserved site 0
    PatternScan AP endonuclease, family 1, conserved site 0
    superfamily Endonuclease/exonuclease/phosphatase 1e-17
    superfamily Endonuclease/exonuclease/phosphatase 4.5e-43
    HMMTigr Exodeoxyribonuclease III xth 5.9e-52
    HMMPfam Endonuclease/exonuclease/phosphatase 1.1e-09
    HMMPfam Endonuclease/exonuclease/phosphatase 1.2e-27
    ProfileScan Exodeoxyribonuclease III xth 32.863
    Gene3D no description 1e-14
    Gene3D no description 3.6e-47

    See the detailed result >

    AT2G41460.1

    Model type
    Protein coding
    Short Description
    apurinic endonuclease-redox protein
    Curator Summary
    apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.
    Computational Description
    apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR