K31936

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31936

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased width (PATO:0000600) (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31936

Determination of introduced cDNA(s)

J033085E02 - Rice Full-length cDNAs - Original: J033085E02

full reading [+] show sequence

GATTCTGCTT TCGTCTCCAG AGGTTCGTCT TCTTCTCCTT CCCCCAGCTT 
TGCGCCTTCG CGCAGCCGCG TAATCTCGTC TGCCCTCGCT GCTGGATGTC 
GGCGATCCGC GCCTCTTCTC ACCGGCTACA AGAACTGTGG CATTAACAAG 
GACAAAGATG TCAAGCATGG CAGGCTTGGG AGCTTCTCAG CATGGATATC 
CTCCCCGAAG TCATGAGCCC TGGACTAAAC TTGTACACAG AGAGAGATTA 
CCCGAGTGGT TTGCATACAA TCCAAAGACC ATGAGGCCTC CACCACTTAG 
CCATGATACC AAGTGCATGA AGATTTTATC CTGGAATATT AACGGGCTTC 
ATGATGTTGT AACGACAAAG GGGTTTTCTG CACGTGACTT GGCTCAGAGA 
GAGAATTTTG ATGTGTTATG TCTTCAAGAG ACACATTTGG AGGAAAAGGA 
TGTTGAAAAG TTTAAGAATC TGATAGCAGA CTATGACAGC TATTGGTCAT 
GCAGCGTCTC GAGGCTTGGC TATTCAGGGA CTGCAGTAAT TTCACGGGTT 
AAACCCAATT TCTGTCCAAT ACGGGATTGG CATACGTGAA CATGATCATG 
AGGGCAGGGT TATTACTCTG GAGTTTGATG GTTTTTACTT GGTAAATGCC 
TATGTTCCAA ATTCTGGTCG TTTTCTACGT AGACTGAATT ACAGGGTCAA 
TAACTGGGAT CCGTGTTTCA GCAACTATGT AAAAATACTG GAAAAGTCGA 
AACCAGTGAT TGTTGCAGGA GACCTTAACT GTGCTCGTCA AAGCATTGAC 
ATTCACAATC CTCCAGCAAA AACCAAGTCT GCAGGTTTCA CAATTGAAGA 
GAGAGAGTCA TTTGAGACAA ACTTTTCTAG CAAAGGCCTT GTGGATACTT 
TCAGAAAACA GCACCCTAAT GCTGTCGGCT ATACCTTCTG GGGTGAAAAT 
CAGCGCATAA CCAACAAAGG TTGGCGATTA GATTACTTTC TTGCGTCGGA 
ATCTATTACC GACAAGGTTC ATGATTCATA CATTCTTCCT GATGTATCAT 
TCAGCGACCA CAGTCCAATT GGCCTGGTAC TGAAGCTATA GTATCGGCGA 
GACTCTAAAA TTCGAGACCT TACTGAAGCC AACTGTACAT AATCACTTGA 
CAAATGCTTA TATAAATCTT TGGCCAGCCT GAAATGTTGC AAGATGTGGT 
AGAGTTAGTC TCCATATCCA TTTGCCAGTC AATATTACGA TTTGTTCTGT 
CAGTCTGTCA GGTGTTCGTC CTGAGACCTT CTGTATATAA CGCGATGCAT 
TTGTTTGCTG TCTCTGGGCC AAACTTTCAT AGGCATTTTA TCATGAAATA 
TGATTCC

Gene models with high sequence identity

AT2G41460.1 [+] show detail - apurinic endonuclease-redox protein
E-value: 1e-108; Score: 161.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Exodeoxyribonuclease III xth	1.6e-68
PatternScan	AP endonuclease, family 1, conserved site	0
PatternScan	AP endonuclease, family 1, conserved site	0
superfamily	Endonuclease/exonuclease/phosphatase	1e-17
superfamily	Endonuclease/exonuclease/phosphatase	4.5e-43
HMMTigr	Exodeoxyribonuclease III xth	5.9e-52
HMMPfam	Endonuclease/exonuclease/phosphatase	0.0000000011
HMMPfam	Endonuclease/exonuclease/phosphatase	1.2e-27
ProfileScan	Exodeoxyribonuclease III xth	32.863
Gene3D	no description	0.00000000000001
Gene3D	no description	3.6e-47

See the detailed result >

AT2G41460.1

Model type: Protein coding
Short Description: apurinic endonuclease-redox protein
Curator Summary: apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.
Computational Description: apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: AP endonuclease, family 1, conserved site (InterPro:IPR020848), DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1 (InterPro:IPR000097), AP endonuclease, family 1, binding site (InterPro:IPR020847), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins in 2340 species: Archae - 119; Bacteria - 5352; Metazoa - 387; Fungi - 388; Plants - 165; Viruses - 2; Other Eukaryotes - 2563 (source: NCBI BLink).
Link: InterPro Scan - TAIR