K31947

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31947

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31947

Determination of introduced cDNA(s)

  • J013043L16 - Rice Full-length cDNAs - Original: J013043L16

    full reading [+] show sequence

    Nucleotide sequence: J013043L16 - full reading 
    TTGATTGTTA TTCCAATCTC ACTTGGTCGT TTAGTTTTTG AGGCTATTCC 
    CCGCCTGCCA ATCACACATG GCATCAAGTG CAATGATTTA TTCTCTTTCA 
    GCATTGGATG TTATATTATC TGGAGTGCAG CAGCTGGAAC CAGATATGCA 
    ATTGATTACA TTCGATCACG ACGACTGGCC TTCCTAGTGC AACAAATCTG 
    CAAGTGGTGC TCTATTGTTG TGAAGAGTTC TGCTCTCCTG TCAATATGGA 
    TCTTTGTTAT TCCTGTGTTG ATTGGACTCC TGTTTGAGTT ACTGGTCATT 
    GTACCCATGA GGGTGCCTAT TGACGAGAGT CCGGTTTTCC TGTTGTATCA 
    GGATTGGGCT CTTGGATTAA TATTCTTAAA AATATGGACT AGGCTGGTTA 
    TGTTGGATCA AATGGCACCT TTGGTTGATG AAAGCTGGAG GACGAAGTTT 
    GAGAGGGTTA GAGAGGATGG CTTCTCCCGT TTGAGAGGTC TATGGGTCCT 
    GCATGAAATC ATAATGCCTA TTGTCACCAA GCTCCTTACA GCTCTCTGCG 
    TTCCATATGT TCTTGCAAGG GGTGTCTTCC CAGTGCTTGG TTACCCACTC 
    ATTGTGAACT CAGCGGTCTA CCGTTTCGCG TGGCTTGGCT GCCTGATATT 
    CAGCGCGCTG TTCTTCTGTG GCAAGAGATT CCATGTTTGG TTCACCAATC 
    TCCACAATTC CATTAGGGAT GACCGTTATC TGATTGGGCG GAGGCTGCAC 
    AACTTTGGTG AGGACTCACT CCATTCAAGT GAACCTGGAA CAACTACAGC 
    GTCTGACGAT GATGAACACG AGCAAGCACT CATTCCTCGC GATCAGGAAG 
    GAGAGTTGGG GCTGAGGTTC AGGCGCCATA TCATGCGTGG AAACCAACCG 
    AGAATGGCTG CATAAGCAGG GACGAGTTTT TGGACAAAGC AAGGGGCATA 
    TGCACGATCT GACTTCTGCC CTGGAGCTTC TGCTTGTGAT TAGTAATCCG 
    CATTGTAGAG TGAAATGAGT CCGTCAGTTA GTGATAGGAA AAGTAAGGAT 
    TGTTGTACAA CAAAGTCCAA GGGAAGAACA GCTCAAAAAA AAAAGAATAC 
    ACACCAGAAA ACTCATGGTA AGCTCACTTC CCTGTGGCTA TGTGTTGCTG 
    ACTGTAAATA TAGACGAACT ACCCCACACA ATTTATTGTG GTTCTGATGT 
    GTAATGGACA ATGAATTACT CC

    Gene models with high sequence identity

    1. AT4G34100.2 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-123; Score: 437.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G34100.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR