K31947

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31947

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31947

Determination of introduced cDNA(s)

  • J013043L16 - Rice Full-length cDNAs - Original: J013043L16

    full reading [+] show sequence

    Nucleotide sequence: J013043L16 - full reading
    TTGATTGTTA TTCCAATCTC ACTTGGTCGT TTAGTTTTTG AGGCTATTCC 
    CCGCCTGCCA ATCACACATG GCATCAAGTG CAATGATTTA TTCTCTTTCA
    GCATTGGATG TTATATTATC TGGAGTGCAG CAGCTGGAAC CAGATATGCA
    ATTGATTACA TTCGATCACG ACGACTGGCC TTCCTAGTGC AACAAATCTG
    CAAGTGGTGC TCTATTGTTG TGAAGAGTTC TGCTCTCCTG TCAATATGGA
    TCTTTGTTAT TCCTGTGTTG ATTGGACTCC TGTTTGAGTT ACTGGTCATT
    GTACCCATGA GGGTGCCTAT TGACGAGAGT CCGGTTTTCC TGTTGTATCA
    GGATTGGGCT CTTGGATTAA TATTCTTAAA AATATGGACT AGGCTGGTTA
    TGTTGGATCA AATGGCACCT TTGGTTGATG AAAGCTGGAG GACGAAGTTT
    GAGAGGGTTA GAGAGGATGG CTTCTCCCGT TTGAGAGGTC TATGGGTCCT
    GCATGAAATC ATAATGCCTA TTGTCACCAA GCTCCTTACA GCTCTCTGCG
    TTCCATATGT TCTTGCAAGG GGTGTCTTCC CAGTGCTTGG TTACCCACTC
    ATTGTGAACT CAGCGGTCTA CCGTTTCGCG TGGCTTGGCT GCCTGATATT
    CAGCGCGCTG TTCTTCTGTG GCAAGAGATT CCATGTTTGG TTCACCAATC
    TCCACAATTC CATTAGGGAT GACCGTTATC TGATTGGGCG GAGGCTGCAC
    AACTTTGGTG AGGACTCACT CCATTCAAGT GAACCTGGAA CAACTACAGC
    GTCTGACGAT GATGAACACG AGCAAGCACT CATTCCTCGC GATCAGGAAG
    GAGAGTTGGG GCTGAGGTTC AGGCGCCATA TCATGCGTGG AAACCAACCG
    AGAATGGCTG CATAAGCAGG GACGAGTTTT TGGACAAAGC AAGGGGCATA
    TGCACGATCT GACTTCTGCC CTGGAGCTTC TGCTTGTGAT TAGTAATCCG
    CATTGTAGAG TGAAATGAGT CCGTCAGTTA GTGATAGGAA AAGTAAGGAT
    TGTTGTACAA CAAAGTCCAA GGGAAGAACA GCTCAAAAAA AAAAGAATAC
    ACACCAGAAA ACTCATGGTA AGCTCACTTC CCTGTGGCTA TGTGTTGCTG
    ACTGTAAATA TAGACGAACT ACCCCACACA ATTTATTGTG GTTCTGATGT
    GTAATGGACA ATGAATTACT CC

    Gene models with high sequence identity

    1. AT4G34100.2 [+] show detail - RING/U-box superfamily protein
      E-value: 5e-123; Score: 437.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G34100.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT4G32670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR