K32003

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32003

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32003

Determination of introduced cDNA(s)

  • J013124A06 - Rice Full-length cDNAs - Original: J013124A06

    full reading [+] show sequence

    Nucleotide sequence: J013124A06 - full reading
    ACCACCCTTT GATTGTTGAA CGTTTGCAGA ACTACACTGG TGATAGACTC 
    AATTTTGGAC TAGCTGCTGA GCAGGCAAAA TCTGAAGGCT ATAAGATGGA
    GATGGTTATT GTTGGAGACG ATTGTGCCCT CCCTCCACCT CGAGGAATAG
    CTGGTAGAAG AGGTTTAGCA GGGACTATCC TTGTGCACAA GGTTGCTGGG
    GCTGCTGCAG ATGCTGGCTT ATCTCTTGCA GAAGTTGCTG CAGAAGCAAA
    ACATGCATCT GAGGTTGTTG GTACAATGGG AGTTGCACTT TCTGTTTGCA
    CATTGCCTGG TCAGGTGACA TCTGATCGCT TGGGTCCTAA GCAAATGGAG
    CTTGGCCTTG GAATTGTAAG ATTAAACCTT GTCAGTTATT ATTCTCATTA
    AGCACAGAAA TAATTGTCAT TACTTGAATT TAGTTTACTT ATTAGTTTTT
    GTGCCTTTGT ATCTGATCAT TTCCATGCTG AGTGCTGTAA ATTTGCATGT
    TCCCCAAATA TGAAACACGT TTTTTGTTCC GCAGCATGGA GAACCTGGTG
    TTGCTGTTGT TGAGCTCCAG CCCATTGATG TAGTAGTAGA ACATGTTCTT
    AAGCAGATAT TGTCACAGGA AACTCAGTAT CTTCCTATCA CAAGAGGGAG
    CAATGTTGTC CTCCTAATCA ATGGGTAACT AAAGATCTTA GAATTTTCGT
    TTCACCATAT CTCAATGATT ATCATATGGT TTGCTTACTT TATCAGCATT
    TAGTTTCACA GGGAAGGTAA AAAAAGCCTT TTACTTTTGG TATCTTGGTC
    CAACATTCTG ACCTATGATG AGCAGTTGCC TTACACTGTA GTATTACCTG
    ATCGTTTGAT CCCATCTTTG AAATGCAGAT TGGGTGCAAC TCCTATCATG
    GAACTTATGA TTGCAGCAAG AAAAGCAGTT CCTGAATTAC AATTGGAGTA
    TGGGATTGCT GTTGACAGAG TCTACACTGG CACACTTATG ACTTCACTTG
    ATATGGCTGG GTTCTCTATC ACTATTATGA GATCAGATGA AAACATTTTG
    CAGCGACTTG ATGCTCCAAC TAAAGCTCCG GCTTGGCCTG TTGGATCTGA
    AGGAAATCGT CCACCAGCAA AAATTCCTGT TCCAGTACCA CCATCACCAT
    CAGGGAAGGA TGATGAGATT CTCACTGAAC CTCAGGAGTT AAGCAAGCAA
    GGGTGTATTC TGGAGGCTGC TATTGAAGCA GGGGCTAAAG AAATTATCAA
    TATCAAGGAT AACTTAAATG AATGGGATAG TAAAGTGGGT GATGGTGACT
    GTGGAACCAC GGTGAGGCTA AGAATGGGTT GCCAATTTAA CCTCTCATGA
    TATAGCTATT TTAAGATAAA ATATTTGTCT GTATTTTTCA GATGTATAGA
    GGTGCAACAA CTATTCTTGA AGATCTGAAG AAGCGCTACC CAATGAATGA
    TGCAGCTGGA ACAATTAATG AGATTGGGTC AACAGTCCGG AGAGTGATGG
    GTGGAACAAG TGGAATCTTG TATGACATAC TTTGCAAAGC TGCATATGCA
    AGCTTAAAAC AGAACACAAG TATTGGTGCA AATGAATGGG CTGATGCTTT
    GGAGGCCTCT GTTGCTGCGG TTAGCAAATA TGGTGGTGCT AGTGCAGGGT
    ACCGCACAAT GTTGGATGCT CTAATTCCTG CATGTACAGT TCTGAAACAG
    TCTCTCAAAG CCGGGGACGA TCCTGTGACT GCCTTTATCG CGTCTTCTGA
    AGCAGCATCA GCTGGTGCTG AATCCACTAA ACAGATGCAA GCGAAGGCAG
    GACGGTCGTC ATACATTGCA CCCGACCTGG TGGCATCAGT TCCTGATCCA
    GGAGCAGTTG CTGCAGCAGC ATGGTACCGT GCGGCGGCTC ATGCAGTGAA
    GAGTAAGCTG CACGCCTCGG ATAGCTAGGG TAGCGCATGG CATGCTATTA
    TATATGTGCA CGCTATGCCT CATTCATAGA TCAAAAGTAC GACTATACTG
    ACTGACGGCG AAATTCTGGG GGCGTTTTCT CACCCACCCC TTCAGATTTG
    GTTTCCGCTT GTGCCTTTCT GCATGGGCCG AGAAATCGAG TTCCGTATTC
    TTTTGCCCTC ACATCATACA AAAGAGCTCT TTTATTGAAG AGTTTGTAGA
    CGATATTCCA AGCATGAAGT GAAGCTGTGC TTTTGCCC

    Gene models with high sequence identity

    1. AT3G17770.1 [+] show detail - Dihydroxyacetone kinase
      E-value: 6e-95; Score: 176.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily DAK1/DegV-like 3.8e-19
    superfamily Dak phosphatase 0.000000053
    superfamily DAK1/DegV-like 5.2e-38
    superfamily Dak phosphatase 9.4e-35
    HMMPfam Dak kinase 0.0000000028
    HMMPfam Dak kinase 2.2e-18
    HMMPfam Dak kinase 4.8e-45
    HMMPfam Dak phosphatase 7.1e-42
    Gene3D no description 1.3e-17
    Gene3D no description 1e-21
    Gene3D no description 0.00065

    See the detailed result >

    AT3G17770.1

    Model type
    Protein coding
    Short Description
    Dihydroxyacetone kinase
    Computational Description
    Dihydroxyacetone kinase; FUNCTIONS IN: glycerone kinase activity, ATP binding; INVOLVED IN: glycerol metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dak phosphatase (InterPro:IPR004007), Dihydroxyacetone kinase (InterPro:IPR012734), Dak kinase (InterPro:IPR004006); BEST Arabidopsis thaliana protein match is: Dihydroxyacetone kinase (TAIR:AT1G48430.1); Has 5081 Blast hits to 5076 proteins in 1119 species: Archae - 14; Bacteria - 4130; Metazoa - 96; Fungi - 207; Plants - 69; Viruses - 0; Other Eukaryotes - 565 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR