K32004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32004

Determination of introduced cDNA(s)

  • J013111M06 - Rice Full-length cDNAs - Original: J013111M06

    full reading [+] show sequence

    Nucleotide sequence: J013111M06 - full reading
    GAGTTGGTAA CCTTGTTTTC AATATTGCTC GGAACTCTTA AATTTTTTGA 
    CATGATCCTT CTCTTTAACT TTCCTCTGAT AATGCCTTTT CCTGCTCAGG
    TCTTCTGACT GCTGTAAACA AGAACTACTT CCATGTCTTG AACTACCGGG
    AGCTTCTCTT CAATGATTTT GGAGATAGAG TTGCACAGCT GTTGCATGTC
    GAATCAGCCA TGCCTTTCTG GCAGAACCGA AGCAGCAGTT GCATCCAGCA
    GCAGAGCCTC ATTGTGAACA CCCATTTGCT GTTCCCTCAT GACCACAGCC
    TTTCAATAGT TCGGCTGAAG CAGGTCTATA AGATCCTTCA GTACATAGAA
    GCTTATCAGG AAGAACATAA ACTTGGTCCA ATGCCAATCA TCCTATGTGG
    TGACTGGAAT GGAAGTAAAC GTGGGCAAGT TTACAAGTTC CTCCGATCAC
    AGGGCTTTGT TTCGTCATAT GACACTGCTC ATCAGTACAG TGATAGCGAA
    GAAGATGCCC ACAAGTGGGT GAGTCATCGG AACCATAGAG GAAACATCTG
    TGGTGTTGAT TTCATTTGGC TTCTAAATCC AAATAAGTCG AGGAAGCCCC
    TGAAAACTAG CTGGAATGAA GCTGTCTTTG GTATCATCAA GTATCTTCTC
    CTCCAAGTAG CGTCCCTTTC AGAGGAGAAT GCATTTGCAC TCCTCAAGGC
    TGACAGTCCT GATGATCAGA TCACATATTC AAGCTTCTGC CAGGCACTTT
    GTCAGTTAGG GATGGTCCAT CCTGATCGCC TAAACTCTGA AGAAATTAAA
    GATCTGTGGA GTGAAGCTGA CCATGACGGG GATGATATTG TTGACTACAA
    AGAATTTCAG CGGTGCATCT GGAGCCCTAC ATGCTGCAGC CAAGAGGAGG
    AGGATGAGCG AAATCGACAT CTCCGATGGA AGCCTTGTCA CGTTTGAGGC
    GAACGATGAA GCCTTTGGCT TTACTGTGAA GGAAGCTGTT CTCTTCCCCC
    CAGAAGTAGA GAAGGGCATG TGGCCTGAGA ACTATAGCCT TTCAGATCAT
    GCTCCCCTTA CTGTGGTATT CTCCCCTGTA AGAATGCCTT GTTCTCCACG
    CACCCCTCGA ACCCCCTAGC CATCAATTGT CAATACTTGC GTGCATACAG
    GAAAAAAGAA GCCTTGTACA GCATTAGGGT ATACTTTCAG AAATAGTGAG
    ATATACAGCA GATCCAGAGT TTAGGTACAA AATGGAGTAA CATAGGGCGA
    CTGAATAGTT TTCTTTCCTT TTTTTGTTTA TTCGTTCGCC TTGAGTTGCT
    GTCTGTTGTA TGTATCTAAA CATGGTTCCA TGTTCATAAA TGTAAATTTT
    GCTCTGTTTT TGTATGTATA TGATTAATTA CATTATGTC

    Gene models with high sequence identity

    1. AT5G54130.2 [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
      E-value: 3e-119; Score: 87.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily EF-hand 2.9e-09
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPfam Endonuclease/exonuclease/phosphatase 2.7e-06
    HMMPanther CARBON CATABOLITE REPRESSOR PROTEIN 4 1.5e-09

    See the detailed result >

    AT5G54130.2

    Model type
    Protein coding
    Short Description
    Calcium-binding endonuclease/exonuclease/phosphatase family
    Computational Description
    Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR