K32012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32012

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32012

Determination of introduced cDNA(s)

  • J033147A07 - Rice Full-length cDNAs - Original: J033147A07

    full reading [+] show sequence

    Nucleotide sequence: J033147A07 - full reading 
    TTTCTTCTTC AGTGTACTCT GCCTTTATAA CACCCTACTC CTCTCTCTCA 
    CCTCCACCAT CTAGCTCACT CACACAGTCT CCACTCACAC GCATTGCAGA 
    GGAGAGGCGA CAATGGAGGG GAAGGAGGAG GACGTGCGGC TGGGGGCGAA 
    CAGGTACTCG GAGAGGCAGC CGATAGGGAC GGCGGCGCAG GGCGCCGGGG 
    ACGACAAGGA CTACAAGGAG CCGCCGCCGG CGCCGCTGTT CGAGCCAGGG 
    GAGCTCAAGT CGTGGTCTTT CTACCGGGCC GGGATCGCCG AGTTCGTCGC 
    CACCTTCCTC TTCCTCTACA TCACCATCCT CACCGTCATG GGGGTCTCCA 
    AGTCCTCCTC CAAGTGCGCC ACCGTCGGCA TCCAGGGCAT CGCCTGGTCC 
    TTCGGAGGCA TGATCTTCGC GCTCGTCTAC TGCACCGCCG GCATCTCCGG 
    AGGACACATC AACCCAGCAG TTACTTTTGG GCTGTTCTTG GCCAGGAAGC 
    TGTCCCTGAC CCGGGCCATC TTCTACATAG TGATGCAATG CCTAGGGGCC 
    ATCTGCGGAG CTGGAGTTGT GAAGGGCTTC CAGCAGGGTC TGTACATGGG 
    CAATGGCGGT GGTGCCAATG TAGTTGCCAG TGGCTACACC AAGGGTGACG 
    GTCTTGGTGC TGAGATTGTT GGCACCTTCA TCCTGGTCTA CACCGTCTTC 
    TCAGCCACTG ATGCCAAGAG GAATGCCAGG GACTCACATG TTCCTATCCT 
    TGCCCAACTG CCAATTGGTT TTGCGGTGTT CCTGGTCCAC CTGGCCACCA 
    TCCCCATCAC CGGTACTGGC ATCAACCCAG CCAGGAGCCT TGGCGCTGCC 
    ATCATCTACA ACAAGGACCA TGCCTGGAAT GACCATTGGA TCTTCTGGGT 
    TGGTCCCTTC GTTGGCGCTG CCCTGGCTGC CATCTACCAC CAGGTGATCA 
    TCAGGGCGAT CCCATTCAAG AGCAGGTCTT AAGCCCCGCG CCGCCGCTGC 
    GCAGCCGACG ACATGCAACG CAATCGTGAT GTCCTGTTTC CCGCGCGCTA 
    CTGCTGCGCA TCTGTCGATT CCCTCTATCT CTAGTCCCCA AGATGTTTTT 
    CCTATCTGAA CCCTGAACAA CTCAATCGTG TAATCCAGTA CTCAGTCACT 
    GTATGTTTTT ATGTGATGGA GATCTTAATT CTTAAGTTAT CATCTCTGTT 
    GCTGG

    Gene models with high sequence identity

    1. AT4G23400.1 [+] show detail - plasma membrane intrinsic protein 1;5
      E-value: 5e-142; Score: 501.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Major intrinsic protein 6.4e-63
    superfamily Major intrinsic protein 1.9e-60
    HMMTigr Aquaporin 1.9e-96
    HMMPanther AQUAPORIN-RELATED 5.5e-195
    HMMPanther Major intrinsic protein 5.5e-195
    FPrintScan Major intrinsic protein 2.4e-70
    FPrintScan Major intrinsic protein 2.4e-70
    FPrintScan Major intrinsic protein 2.4e-70
    FPrintScan Major intrinsic protein 2.4e-70
    FPrintScan Major intrinsic protein 2.4e-70
    FPrintScan Major intrinsic protein 2.4e-70
    HMMPfam Major intrinsic protein 7.4e-84
    PatternScan Major intrinsic protein, conserved site 0

    See the detailed result >

    AT4G23400.1

    Model type
    Protein coding
    Short Description
    plasma membrane intrinsic protein 1;5
    Computational Description
    plasma membrane intrinsic protein 1;5 (PIP1;5); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10720 Blast hits to 10702 proteins in 2215 species: Archae - 88; Bacteria - 5150; Metazoa - 1472; Fungi - 448; Plants - 2512; Viruses - 2; Other Eukaryotes - 1048 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR