K32015

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32015

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32015

Determination of introduced cDNA(s)

  • J013054L24 - Rice Full-length cDNAs - Original: J013054L24

    full reading [+] show sequence

    Nucleotide sequence: J013054L24 - full reading 
    GACCGCGATG CCACTCCTCG ACACCCCCTA CCTCGCCCTC CGCGTTCGCC 
    TCCCCCGCTT CCCGACCCCC CACAATCCCA GACCCGCCGT TGCCATCGAA 
    GCCCAGCACT CCTTTCCCCA CGGCCTGCTC GCCCGTGCCG CGTGCCAGCC 
    GCTCCGTCAC GTCGCGGCTC CAGCGGAGGG GGAGGGGGAA GAGGTAGAGG 
    ACCTCGGCAC GCCGTCGGCT GCGGCCGTGG CGGAGGCCAT CCGGCGTGCT 
    TCGAGCGCGT CGCCGGTGCG TTTCAGGAGG GTGCACCGGG AGGAGAATGA 
    GAAGCTGCGA GGAGAGGGAG GCTTCACGGA GCCCAGCACC GACTTCCGGC 
    GACTGTGCGG GGAGCAGCTC GAGATGTTCC GGGTGGTCAT CTCCCGCGAC 
    GCCGTCCTCT CTGTGTATGT AAGACCTGCT GGCAGTTATA TTATGGATCA 
    GCTTGAATTA CGTCGAGTTG CTTTATATCC TGAAACTAAT GTTTCTAAAG 
    GAGATACAGT GATTCTAGTT GGTAATTTCA CCATATCTGC TGGACTAAGA 
    GCAGCGGAAG CTTTTCTTGT AAAACACCAG ATGGAAATCA TAACTGAATT 
    TGGAGCTGTA GTCCTTCCAA TGGTGAAACA CCCATTTGTT GTTGGTTTCC 
    TTGTTGCGGA GCTCCCAGAA CTAGTTGGAT GTACAAAGAA CTCCGAGACT 
    TCTGATATTC AGATACCATC ACACTCATTC TTAGACAAGT CATCAGATAT 
    AACTCCATAT ACTAAAGGGG AAACTTGGGA TTTTCAAACT TCTGGAGACC 
    AAGCTAATAG TTATGCTCAG TTAGTTACTG AATGGAAAAA TAGTGCACTT 
    ATGATTTCTC GAACTTTAGC AATGGCTTAT GTCATGGACC AGGTAGTTTG 
    TTCATGACCA TTAGATAATT TTTATTCAAA ATAAAATCAT TCATTAACTG 
    TTTTTGACTG GAATCATTAA CTGTTGCCAG CCAATGCCTA TAACCTTTCT 
    TGTAGACACA TATTATTTTG GAATTTGGGA AAACATGCAA TTAGGAATGC 
    AGTTTTGAGG CATCCCCTTT GATATACAGC AGGCATATGT GAAATATTTC 
    CTGATGTTTT ATTCATAAAA CATGGGCATG TGTAACAGAT ATGCTCTTGA 
    TAAACTGAAG AAAATATTCC ATAACTGAAT TCCTCGCCTG CTCTAGTTTA 
    CATTGCTAGT TATATATTTT GGTTATTCAC ATAAGTGCAT TCCTCGCAGA 
    AAGCATATTT GCTTCAGCAA GCTTCCTGGC AAAACAATAT TAGAATGAGT 
    GGCTTAGTAG AACAGATTCG AGGACCCCTC GCTAATATAA GAGCTCTTGC 
    AAAGATGTTA TCAGTTCATA CAAAGAGAAA TGAGATCTCT TATGATATTG 
    TTGAAGACGT TATGATCCAA GGTGATCATT TGAAAGATGC TTTGCAACAG 
    ATTCAAGATG CAGTTTATCT GACTAAGGTG AACATAGTTA GGTACAATGA 
    GGAAACCTTA AAGAAAATTC AGGGGTCACC TTCTTCAAGA ACTCTACCAC 
    ACTATCAATC AGATCCTAAG AATAGTTCAC AGAAAGTTGA TTCGTTGTCA 
    TCACATGATT CTGACAATGG AGACATGGTG ATACCCATGC CACCTCTCTG 
    GCTGGCCCCT CTTCAACCCC AAGACGCTAG GCAGACCATG TGATCTCTCT 
    GTTGTACTGG AAGATTTGGT TGGAGCAGCT CAACCGCTTG CTTTTAGGCA 
    GCAACGCACT CTAGATGTAA CAGGAATTTC ACACCCGCTT CAAGTTGCTG 
    TTGAGGAATC TGCTTTAAGA CAAGCGCTGA GTAATCTCAT AGAGGGTGCT 
    CTTCTACGCA CTCAGCTTGG TGGCCGAGTT CAGATATATG CTGGTGAAGC 
    ACCTGCAGGA GGCATTCTCG TTGTCATTGA TGATGATGGT CCTGACATGC 
    AATACATGAC ACAGATGCAT TGCCTTGCTC CATTCGGGTC AGACCTTGCG 
    GATGGTATGC ATGAAGATAA TATGACATGG AATTTCATTG CAGGATTAAC 
    AGTTGCCCGT GAGATACTTG AGAACTATGG CTGTGTTTTG CGTGTGATAT 
    CGCCTCGGAG ACCTGATGCA ATTATAGGGA CTGGAGGTAG TCGTATTGAG 
    ATATGGTTGC CAACTTCACA GACAGAACTA TCTGAGATCA CTGAAGGAGC 
    TTAGCTGAAT TTTAGTAATC AACGCATGTT TAGAAGATAA AGGTCATGTT 
    TAATTGGCAT GATGGAGATC ATACCACCTT TTCTGTTTTG GAAATGTTCG 
    AACGACGGCT GCAAAGTGAG CTTATACTTC TGATTAGATC AGTCATCAGT 
    GAAGCACCAT ATGAACATCT TTACACGCAT TCCAGTAAAG CATGTTACCT 
    GTGGAAAAAG CACCATATGA ACACCTTTGG ACGTTTTTGT AGCATAAGGA 
    ACTGTAGCAC GGTATACAGT TTGTATGGTA GAGCTAGATA CCGCACTTAT 
    GAAAAGAAGT ACTTTTTTGT TGTTT

    Gene models with high sequence identity

    1. AT1G67840.1 [+] show detail - chloroplast sensor kinase
      E-value: 3e-101; Score: 161.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam ATPase-like, ATP-binding domain 0.000001
    superfamily ATPase-like, ATP-binding domain 0.00000000004
    Gene3D ATPase-like, ATP-binding domain 0.0000012

    See the detailed result >

    AT1G67840.1

    Model type
    Protein coding
    Short Description
    chloroplast sensor kinase
    Curator Summary
    Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II.
    Computational Description
    chloroplast sensor kinase (CSK); CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594); Has 698 Blast hits to 698 proteins in 263 species: Archae - 2; Bacteria - 628; Metazoa - 0; Fungi - 1; Plants - 41; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR