K32031

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32031

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32031

Determination of introduced cDNA(s)

  • J033082K05 - Rice Full-length cDNAs - Original: J033082K05

    full reading [+] show sequence

    Nucleotide sequence: J033082K05 - full reading
    GTGAAAGAGA AGAGAGAGAG ATCCCCTCTC GCCTCGCCTC CTCCCTCCTG 
    CCTCCTCGAT CCCGATCTCT CCTCCTCCGC CGCCTCGCCG CCGCCGCCGT
    GGACGCCTCA AGGGCTGATG GAAAATTTCT CCCCGAGAAC CCTGCTCAAT
    AGTATCTTGC GTATCACTGT CTTAACCTCC GATGGCTCTA CTGCAAGGCC
    CAAGCCCATT CAGAAGTACT GCCAAAATGT GTGTGATATC TCAAGCATTG
    TGAGCCCTCT CATAGAGGAT CTATGTGAGT CTCCTGAAGA GCAACTCAAT
    GAGGTGTTAA GGGAGCTTGG CACTGCTATT AACAGAGCTT CAGGGCTTAT
    TGGGAACTGG CAACAGACAA CCAGCAAAAT ATATTTTATA TGGCAGATTG
    AATCAGTAAT CTCAGATATC CAGGGATGTT CTCTACAGCT GTGCCAGCTT
    GTTAACTCTC TATTACCTTC TTTGACTGGC CGTGCATGCA CATGTATTGA
    GAAACTCCAA GACATAAATT ATGAAAACAT GTTTGATCTG GTAAAGGAGT
    CTTCATTGGA GCTAGTTGAG ACGGACACAA CAAGTCCTGA GAATCTGTCG
    AGACTATCTA GTTCATTGAG TTTGTCAACT AACCTGGAAT TTTACATGGA
    AGCTGTTTCC CTTGAGAATC TCAGAGCAAG GGCAATGCGG AGTGAGAACC
    GTGAAGAAAT GGATCTGGCT GACAAGATGA TCCCCCTGGT CAACTATATG
    CATGACCACC TTCTGAGGGA AACACAACTG CTTAGCATCA ATGGGGTGCC
    CATTCCTGCA GATTTTTGCT GCCCGCTGTC CCTAGAGCTG GTGTCAGATC
    CTGTTATTGT AGCATCTGGT CAGACATATG AGCGGGTTTA TATCAAGTTA
    TGGCTTGATG AGGGTTTTAC TATCTGCCCG AAGACACGCC AAAGACTTGG
    TCACTCCAAT TTAATTCCAA ATTAAACCGT GAAAGCTTTG ATAGCTAATT
    GGTGCGAATC ACACAACATT AGGCTTCCTG ATCCTATGAA ATCCTTGAAA
    TTGAACTTCC CTTTGGCTGC GTCTGCTCTC CAGGATTCGA GCACCACAGG
    AAGCAGCCCT CTACATCCTA CTGTCGCTGC TAAGGGTAAT ATTCCTGGGT
    CCCCGGAAGC TGACCTTTAT ATGAGAAGCT TGAATAGAGC ATCTCCTCCA
    CACAGTGTAG TCCATCAGAA TTCTCATGCG CATGTGAACC GTGCTGGTCA
    TGAAGCCTCC ATTAAGCAAT CTTCAGAAAA TGCTAATGGT TCTGCATCAG
    ATGTTTCAAG GTTATCTCTT GCAGGTTCTG AAACAAGAGA GTCTAGTCTG
    GAAGAAAGAA ATGCTGGTTC TATCGGTCAA ACTTCAGAAC AGTCAATTGA
    GGAAGCATTT CAAGCATCTA ATTTGGACAG GGATTCACAT GACCATGTGG
    GTAGTTCTTC GGTGAATGGT AGCCTTCCAA ATAGCGGTCA ACTTGATGCA
    GAATGTGACA ATGGGCCAAG CGAAAGGACA AATTACAGTA GTGATGCATC
    TGGAGAAGTT ACAGATGGGC CTTCAGCATC TTCTGCTCCT CAGAGGGAGC
    ATCTAATCCC TTCTAGATTG GCTGATGTTC GTAGTAGAGG CCAATTTGTT
    CGGCGACCAT CTGAAAGGGG TTTCCCCAGA ATAATATCTT CCTCATCCAT
    GGATACACGG AGTGATCTTT CCGCCATCGA GAATCAGGTC CGCAAGTTAG
    TTGATGATTT AAGAAGTGAT TCTGTAGATG TTCAAAGATC AGCGACATCA
    GATATCCGCC TTTTAGCTAA GCACAACATG GAGAACAGGA TCATCATTGC
    AAACTGTGGA GCTATAAACT TGCTGGTTGG TCTTCTTCAT TCGCCAGATT
    CCAAAACCCA AGAGCATGCC GTGACAGCCC TTCTGAATTT GTCAATCAAT
    GATAATAATA AGATTGCCAT TGCAAATGCT GATGCTGTTG ACCCCCTCAT
    CCATGTCCTT GAGACTGGGA ACCCTGAAGC CAAGGAGAAT TCAGCGGCTA
    CATTATTCAG TCTCTCGGTT ATTGAAGAAA ACAAAGTGAG GATTGGAAGA
    TCCGGTGCCA TCAAACCTCT CGTCGACCTA CTAGGAAATG GGACCCCTCG
    AGGAAAGAAA GATGCAGCTA CTGCATTGTT TAATTTATCC ATATTACATG
    AGAACAAGGC GCGTATTGTG CAGGCTGACG CTGTGAAGTA CCTAGTTGAA
    CTTATGGACC CTGCTGCTGG AATGGTTGAC AAAGCTGTGG CTGTTTTGGC
    AAACCTTGCT ACCATACCAG AAGGGAGGAC AGCAATTGGT CAAGCGCGTG
    GTATTCCAGC CCTTGTTGAA GTTGTTGAAC TCGGTTCAGC AAGGGGGAAG
    GAAAATGCGG CTGCAGCATT GCTTCAGCTA TGTACAAACA GCAGCAGATT
    TTGCAGTATA GTTCTTCAAG AGGGTGCTGT GCCTCCTCTA GTTGCATTGT
    CACAGTCAGG CACGCCACGG GCAAGAGAGA AGGCACAGGC TCTTCTCAGC
    TACTTTCGCA GCCAAAGGCA CGGGAATTCA GCAAGGAGAT GACCTTCTCA
    GAATTTTTTG TAGGTATACA TTAAGCATCT CCTCTGATTC CTTCAGGCAT
    CGGCTTGGCT CCTCATATTG TTGTTGTTGG CTCTTGGGTG GCCCTATGTA
    TTGTTTATAG TCAAATTGAG ATTGTGCTCA TGTCATACAA ATGTTGTGAG
    CGATGGGTTG GGTGTTTGTT GTTGAGATGG TGTAACTTTT GGTTCTCTTT
    TCTTTTTTGA AGGATATCTT TGTTCTTGTA TAGGTTGTCC ATTGGTAGCA
    ACTTACCTAT TCAATGGGAT TTTGCTTTGT ATATGCTATT AACCCTGACA
    TTATGATTGT TTTGAATGGT TGTAAAATTC GATATTGCCC TGCATGTTGT
    ACC

    Gene models with high sequence identity

    1. AT2G23140.2 [+] show detail - RING/U-box superfamily protein with ARM repeat domain
      E-value: 0; Score: 632.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.3e-17
    Gene3D Armadillo-like helical 7.2e-57
    HMMPanther CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN 5.5e-07
    HMMPanther TPR REPEAT CONTAINING PROTEIN 5.5e-07
    HMMPanther ANKYRIN-REPEAT-ARM DOMAIN PROTEIN 4.5e-23
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 4.5e-23
    HMMPfam U box domain 2e-14
    HMMPfam Armadillo 2.8e-09
    superfamily RING/U-box 9e-14
    superfamily Armadillo-type fold 5.4e-63
    HMMSmart U box domain 1.7e-15
    HMMSmart Armadillo 3.8e-05
    HMMSmart Armadillo 0.07
    HMMSmart Armadillo 0.15
    HMMSmart Armadillo 0.72
    HMMSmart Armadillo 2.1
    HMMSmart Armadillo 390
    ProfileScan Armadillo 12.372
    ProfileScan Armadillo 9.817
    ProfileScan Armadillo 8.802

    See the detailed result >

    AT2G23140.2

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein with ARM repeat domain
    Computational Description
    RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1).
    Link
    InterPro Scan - TAIR