K32042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32042

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32042

Determination of introduced cDNA(s)

  • J033082M03 - Rice Full-length cDNAs - Original: J033082M03

    full reading [+] show sequence

    Nucleotide sequence: J033082M03 - full reading 
    GAGTCACCCG GCCCACAGGC CACAGCTACT AGCAGCAGCA GCAAGACTGC 
    AAGAGGGGGG GAAGAAGCTA GGTAGCTAGT AGTACGATGC AGCAGCCGCA 
    GGCGAGCAGC ATGACGGCGG CGGCGAGGAG GCGGCAGCTG CAGGGATCGG 
    TGCTCGCCGG GAAGATGGTG CTCGTGCGCA AGGCTCTCGA CACCAACTTG 
    AACTCCGGCG ACGTCGTGTG CCAGCTCGTC AGCTCCACGG TCGGCGACCC 
    CGACAATGGC AACAGGGGGA TGTTGGGCCA GGAGGCATGC GTCCATATCA 
    ACTCGGAGCT ACACCCAACT CCCTACGAGG CCTCCACATT CAGCTTCGAG 
    TTCATCTGGG ACATGAAGAA ACAGGGTGTC CCCGGAGCGG TCATCGTCAA 
    GAACTATTGC GACGAGGAGT TCTTCGTCAA CACCATCACC CTCGACATTG 
    TACCGGGCTA TGGAACCATC GTCTTCACCG CTGAGTCGTG GGTTTACCCC 
    GACGAGATAT ACGACCATCT GCCCCGTGTC TTCTTCAGTA ACCAACCATA 
    CCTGCCAAAC CAAATGCCGG CGCCGCTGGT GCCGTATAGG GAGGAAGAGC 
    TCCGGAACCT GAGAGGCGAC GACAATCCGG GCCCGTACAA GGACCATGAC 
    CGTGTCTACC GCTACGACGT CTACAACGAC CTCGGCGAGC CAGACAGTGG 
    CAACCCGCGC CCCGTGCTGG GTGGCTCCGA CGAGCACCCT TACCCTCGCC 
    GCTGCCGCAC CGGCCGGAGG CGGACCAACA CCGACCCCGA CTCCGAGAGC 
    CGCAACGTCG GCTTCCCCCT AACCAACCAT TTTTACGTGC CCCGCGACGA 
    GGTGTTCAAC GACCGCAAGA AGGCCTACTT CGACACCAAC AACCTCAAGC 
    TCTATATCAT GCAAAAGTAC GCCACCTTTC TCTTGCACGC CGACCAGCAG 
    ACCCCCTTCG AGTTCGACAG CTTCGCCGAC GTGCTAAGCC TCTACGACGA 
    GGGCTCCATC AACCTGCCCG GATGGCTCAA CACTTTCCTC CAACCATTGC 
    TCGGCATAAT CCCCTTCAAG TTGCTCCAGC AAGTCCTCAC CCCCGATAGC 
    GAGTTCATCC TCAAGTTCCC CATGCCGGCG GTCATCAGGG AGGACAAGAC 
    GGCATGGCAA ACAGACGAAG AGTTTGCGCG CGAGATGCTC GCCGGCACCA 
    ACCCGGTCGT CATCCGCCGG CTCGGGGAAA CCGAGTTCCC GCCCAAGAGC 
    AAGCTAGACA CAAGCAAGTA TCACAACCAG AACAGCAGGA TCACAGCGGC 
    ACACGTCGAG AAGTGCCTCG AGGTCGAGGG CCTCACCGTC GAGCAGGTGC 
    TAGCCGACGG CCGCCTCTTC ATCCTCGACC ACCACGACCA CTTCATGCCG 
    TACCTGCTCG ATGCCAACCA TCAACCCGAC ACTTTCGTCT ACGCGACGAG 
    GACACTGCTC TTCCACCGCA ACGATGGCAC TCTCCAGCCT GCAGCAATCG 
    AGCTCAGCCT ACCTCGCTTT GAGGCCGGCA GCACACTCAT CTCGTCCGTC 
    GGCGAGGTTT ACACGCCGGC GTCAGACGGC GTGGAGGGCC ACATCTGGCA 
    GCTTGCCAAG GCCTACGTCA CCGTCAATGA CTACTCGTGG CACCAGCTCG 
    TCAGCCACTG GCTCAACACG CACGCGGTGA TGGAGCCGTT CGCCATTGCC 
    ACGCACCGGC AGCTCAGCGT GGCGCACCCT ATCCACAAGC TCCTCCACCC 
    GCACTATCGT GACAACTTGT TTATCAACGC CCTCGGCCGC CAGAGTCTGA 
    TCAACGCCGG TGGTAGCTCC GAGAACACCG TCTTCCTCGG CAAGTATGGG 
    CTCTCCATGA CATCGGAGGT GTACAGGAAC TGGAACTTCA CCGAGCAGGC 
    GCTCCCGGAG GACTTCATCA AGAGGGGCGT CGCCAAGCGC CGCTCCAATG 
    GCGAGCTGGA GCTGCTGATC AAGGACTACC CGTACGCCGT CGATGGGCTC 
    GCCATCTGGT CGGCAATCGA GACTTGGGTC CGCGACTATT GTGCCATCTA 
    CTACGCGGAC GATGCGGCGG TCCAGGGCGA CGCCGAGCTG CAGTCGTGGT 
    GGAAAGATGT GCGCGAGGAA GGACACGGAG ACCTCAAGGA CCACAAATGG 
    TGGCCGGAGA TGAAGACGGT GGCCGAGCTT GTCCAGTCAT GCGCCACCAT 
    CATCTGGATC GCCTCGGCGC TGCACGCGGC CGTCAACTTC GGCCAGTACA 
    TGTACGCCGG CTACGTCCCG AACCGGCCGT CGGTGAGTCG GCGGCCGATG 
    CCGAAGCCGG GCACCGACTT GTACAGGGAG CTGGAGCTCC ACCCGGAGAA 
    GGAATTCCTT CTCACCATCA CTAAGCAGGA CCTGTCCATA GCTGGCATTG 
    CCCTCGTCGA GCTCCTATCT AGCCATTCCG ATGAGCCCCT CTGATCCATC 
    TCCAGTACTT GCTCATGCAC ATAGTACTGC CCAATCGCCA GCTGTGGCCC 
    CTGCTCCTCA CTCATTTCTA TTGCAGCATA TGCCACGCGG CAGCATTCGT 
    GTCAATGGGC TCTTGCATTC CTGTTGTGCA TGCTAATGGG TCTACCATAA 
    GGAGGGCAGA CTATCTAAAC AGAATATATA CTCCAAAAAT AAGCAGCCTC 
    ACCGATCACC GGCCGTCTTC AGAAGATAAC TGAAGTTGCT CATGCGCGAA 
    ATTGCGCATC CAGGTCAGGT GGGTGGTGTA TATTGTGTTA GAAACATGTA 
    AATATGGGCG GGGCAAATGC AAAAACAAGC ATACCTGTGT GTAGTGGTCA 
    AAGCCAAGGA GGTGGCAGGC CCCTTCTGTT GTTGCACAGG TGAAGCTCTG 
    TCCTGCGTTT GCAGTGTAAT AGTGCTGAAA AATGATGGTG GAATCCAATA 
    TTAGATGCTT ATACCGTTTT ACATGGGAGC

    Gene models with high sequence identity

    1. AT1G55020.1 [+] show detail - lipoxygenase 1
      E-value: 0; Score: 688.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Lipoxygenase, conserved site 0
    PatternScan Lipoxygenase, iron binding site 0
    superfamily Lipoxygenase, C-terminal 1.5e-210
    superfamily Lipase/lipooxygenase, PLAT/LH2 4.2e-25
    HMMPanther LIPOXYGENASE 0
    HMMPanther Lipoxygenase 0
    ProfileScan Lipoxygenase, LH2 12.046
    ProfileScan Lipoxygenase, C-terminal 240.717
    HMMSmart Lipoxygenase, LH2 2.9e-16
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, C-terminal 4.6e-23
    FPrintScan Lipoxygenase, C-terminal 4.6e-23
    FPrintScan Lipoxygenase, C-terminal 4.6e-23
    Gene3D Lipoxygenase, LH2 3.5e-34
    Gene3D no description 4.9e-31
    Gene3D no description 5.3e-22
    Gene3D no description 8.7e-115
    HMMPfam Lipoxygenase, C-terminal 4.7e-234
    HMMPfam Lipoxygenase, LH2 1.4e-12

    See the detailed result >

    AT1G55020.1

    Model type
    Protein coding
    Short Description
    lipoxygenase 1
    Curator Summary
    lipoxygenase, a defense gene conferring resistance Xanthomonas campestris
    Computational Description
    lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR