K32042

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32042

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32042

Determination of introduced cDNA(s)

  • J033082M03 - Rice Full-length cDNAs - Original: J033082M03

    full reading [+] show sequence

    Nucleotide sequence: J033082M03 - full reading
    GAGTCACCCG GCCCACAGGC CACAGCTACT AGCAGCAGCA GCAAGACTGC 
    AAGAGGGGGG GAAGAAGCTA GGTAGCTAGT AGTACGATGC AGCAGCCGCA
    GGCGAGCAGC ATGACGGCGG CGGCGAGGAG GCGGCAGCTG CAGGGATCGG
    TGCTCGCCGG GAAGATGGTG CTCGTGCGCA AGGCTCTCGA CACCAACTTG
    AACTCCGGCG ACGTCGTGTG CCAGCTCGTC AGCTCCACGG TCGGCGACCC
    CGACAATGGC AACAGGGGGA TGTTGGGCCA GGAGGCATGC GTCCATATCA
    ACTCGGAGCT ACACCCAACT CCCTACGAGG CCTCCACATT CAGCTTCGAG
    TTCATCTGGG ACATGAAGAA ACAGGGTGTC CCCGGAGCGG TCATCGTCAA
    GAACTATTGC GACGAGGAGT TCTTCGTCAA CACCATCACC CTCGACATTG
    TACCGGGCTA TGGAACCATC GTCTTCACCG CTGAGTCGTG GGTTTACCCC
    GACGAGATAT ACGACCATCT GCCCCGTGTC TTCTTCAGTA ACCAACCATA
    CCTGCCAAAC CAAATGCCGG CGCCGCTGGT GCCGTATAGG GAGGAAGAGC
    TCCGGAACCT GAGAGGCGAC GACAATCCGG GCCCGTACAA GGACCATGAC
    CGTGTCTACC GCTACGACGT CTACAACGAC CTCGGCGAGC CAGACAGTGG
    CAACCCGCGC CCCGTGCTGG GTGGCTCCGA CGAGCACCCT TACCCTCGCC
    GCTGCCGCAC CGGCCGGAGG CGGACCAACA CCGACCCCGA CTCCGAGAGC
    CGCAACGTCG GCTTCCCCCT AACCAACCAT TTTTACGTGC CCCGCGACGA
    GGTGTTCAAC GACCGCAAGA AGGCCTACTT CGACACCAAC AACCTCAAGC
    TCTATATCAT GCAAAAGTAC GCCACCTTTC TCTTGCACGC CGACCAGCAG
    ACCCCCTTCG AGTTCGACAG CTTCGCCGAC GTGCTAAGCC TCTACGACGA
    GGGCTCCATC AACCTGCCCG GATGGCTCAA CACTTTCCTC CAACCATTGC
    TCGGCATAAT CCCCTTCAAG TTGCTCCAGC AAGTCCTCAC CCCCGATAGC
    GAGTTCATCC TCAAGTTCCC CATGCCGGCG GTCATCAGGG AGGACAAGAC
    GGCATGGCAA ACAGACGAAG AGTTTGCGCG CGAGATGCTC GCCGGCACCA
    ACCCGGTCGT CATCCGCCGG CTCGGGGAAA CCGAGTTCCC GCCCAAGAGC
    AAGCTAGACA CAAGCAAGTA TCACAACCAG AACAGCAGGA TCACAGCGGC
    ACACGTCGAG AAGTGCCTCG AGGTCGAGGG CCTCACCGTC GAGCAGGTGC
    TAGCCGACGG CCGCCTCTTC ATCCTCGACC ACCACGACCA CTTCATGCCG
    TACCTGCTCG ATGCCAACCA TCAACCCGAC ACTTTCGTCT ACGCGACGAG
    GACACTGCTC TTCCACCGCA ACGATGGCAC TCTCCAGCCT GCAGCAATCG
    AGCTCAGCCT ACCTCGCTTT GAGGCCGGCA GCACACTCAT CTCGTCCGTC
    GGCGAGGTTT ACACGCCGGC GTCAGACGGC GTGGAGGGCC ACATCTGGCA
    GCTTGCCAAG GCCTACGTCA CCGTCAATGA CTACTCGTGG CACCAGCTCG
    TCAGCCACTG GCTCAACACG CACGCGGTGA TGGAGCCGTT CGCCATTGCC
    ACGCACCGGC AGCTCAGCGT GGCGCACCCT ATCCACAAGC TCCTCCACCC
    GCACTATCGT GACAACTTGT TTATCAACGC CCTCGGCCGC CAGAGTCTGA
    TCAACGCCGG TGGTAGCTCC GAGAACACCG TCTTCCTCGG CAAGTATGGG
    CTCTCCATGA CATCGGAGGT GTACAGGAAC TGGAACTTCA CCGAGCAGGC
    GCTCCCGGAG GACTTCATCA AGAGGGGCGT CGCCAAGCGC CGCTCCAATG
    GCGAGCTGGA GCTGCTGATC AAGGACTACC CGTACGCCGT CGATGGGCTC
    GCCATCTGGT CGGCAATCGA GACTTGGGTC CGCGACTATT GTGCCATCTA
    CTACGCGGAC GATGCGGCGG TCCAGGGCGA CGCCGAGCTG CAGTCGTGGT
    GGAAAGATGT GCGCGAGGAA GGACACGGAG ACCTCAAGGA CCACAAATGG
    TGGCCGGAGA TGAAGACGGT GGCCGAGCTT GTCCAGTCAT GCGCCACCAT
    CATCTGGATC GCCTCGGCGC TGCACGCGGC CGTCAACTTC GGCCAGTACA
    TGTACGCCGG CTACGTCCCG AACCGGCCGT CGGTGAGTCG GCGGCCGATG
    CCGAAGCCGG GCACCGACTT GTACAGGGAG CTGGAGCTCC ACCCGGAGAA
    GGAATTCCTT CTCACCATCA CTAAGCAGGA CCTGTCCATA GCTGGCATTG
    CCCTCGTCGA GCTCCTATCT AGCCATTCCG ATGAGCCCCT CTGATCCATC
    TCCAGTACTT GCTCATGCAC ATAGTACTGC CCAATCGCCA GCTGTGGCCC
    CTGCTCCTCA CTCATTTCTA TTGCAGCATA TGCCACGCGG CAGCATTCGT
    GTCAATGGGC TCTTGCATTC CTGTTGTGCA TGCTAATGGG TCTACCATAA
    GGAGGGCAGA CTATCTAAAC AGAATATATA CTCCAAAAAT AAGCAGCCTC
    ACCGATCACC GGCCGTCTTC AGAAGATAAC TGAAGTTGCT CATGCGCGAA
    ATTGCGCATC CAGGTCAGGT GGGTGGTGTA TATTGTGTTA GAAACATGTA
    AATATGGGCG GGGCAAATGC AAAAACAAGC ATACCTGTGT GTAGTGGTCA
    AAGCCAAGGA GGTGGCAGGC CCCTTCTGTT GTTGCACAGG TGAAGCTCTG
    TCCTGCGTTT GCAGTGTAAT AGTGCTGAAA AATGATGGTG GAATCCAATA
    TTAGATGCTT ATACCGTTTT ACATGGGAGC

    Gene models with high sequence identity

    1. AT1G55020.1 [+] show detail - lipoxygenase 1
      E-value: 0; Score: 688.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Lipoxygenase, conserved site 0
    PatternScan Lipoxygenase, iron binding site 0
    superfamily Lipoxygenase, C-terminal 1.5e-210
    superfamily Lipase/lipooxygenase, PLAT/LH2 4.2e-25
    HMMPanther LIPOXYGENASE 0
    HMMPanther Lipoxygenase 0
    ProfileScan Lipoxygenase, LH2 12.046
    ProfileScan Lipoxygenase, C-terminal 240.717
    HMMSmart Lipoxygenase, LH2 2.9e-16
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, plant 4.9e-65
    FPrintScan Lipoxygenase, C-terminal 4.6e-23
    FPrintScan Lipoxygenase, C-terminal 4.6e-23
    FPrintScan Lipoxygenase, C-terminal 4.6e-23
    Gene3D Lipoxygenase, LH2 3.5e-34
    Gene3D no description 4.9e-31
    Gene3D no description 5.3e-22
    Gene3D no description 8.7e-115
    HMMPfam Lipoxygenase, C-terminal 4.7e-234
    HMMPfam Lipoxygenase, LH2 0.0000000000014

    See the detailed result >

    AT1G55020.1

    Model type
    Protein coding
    Short Description
    lipoxygenase 1
    Curator Summary
    lipoxygenase, a defense gene conferring resistance Xanthomonas campestris
    Computational Description
    lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR