K32118

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32118

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32118

Determination of introduced cDNA(s)

  • J023092H03 - Rice Full-length cDNAs - Original: J023092H03

    full reading [+] show sequence

    Nucleotide sequence: J023092H03 - full reading 
    GTCTGGATGT TTGCTTAATA GTTTGCCACT CTCATTTGAC GCTTCTGTTC 
    TAGCCCTTAA ATTTGGTGAT ACTGGCTCCA TCTGTGAAGG AATTCTGATA 
    AGCATCATGC TGGACATCCA ACCCCTGCCT ATCGTCCAAC CTTTTGGTCA 
    CCAACAATTG TGCAAAATGT ATAGAAACAA TTACTTTGAG GAGGAGGGTA 
    TCGACCTGCA AACTGGCAAG AAGGAAGCTG CACTTGTTGG AAATCTTTGT 
    GCATTTCAAT TCTGGCAGCG TATGTTTAAG GACAAGTATC GTCTGGATTG 
    TCTGATAAAT GTGGTGAACA CTCATGAACC GAAGGCATCT AATGGTTTTG 
    TTGCTAAACC TGAAGATGAG TGGTGTGCAT TTCATAACCT TGTGCCAACA 
    GCACTTAACT ACATCTCTGA AATTTATGAT GATATTATGG GCACACTTCA 
    CCGATTTAGA CCTAGTTTTC TTGTGAAAAT AAATCCTCCA ATGTACCTTC 
    AGCCTTCCGA ATTCCACCAC ATGTGTCTTC GCCATGAAGT GCTGGAACTA 
    GAGAATGTGA ATTCACTTCC ATTAGAAGCT GAGAATTCTC ACTTGGATTC 
    ACATCGCAGG TGTGCTGCAA CCCCTTATGT TTCTCCAGCT GATTTTGGAA 
    CCACTACTGT TGTTAAAACA CTGAAGACAC TTATCAAGGA GATGAAGACA 
    CAATCTGCGG CAGACAGGGT AACTTATAGA GAACTAGTTC ATGGTTATGT 
    TCAACCAGCG TTGGAAAATG AGATGTGTGT GTTCTTTCTT AATGGATCTT 
    GTAATCGAGG TGATACATGC CATTTTTCTC ATTCTTCTCG TGCTCCAAGA 
    CCAATATGCA AGTTCTTCCT CACATTACAG GGTTGTCGAA ATGGTAACTC 
    GTGTTCATTT TCACATGACT CTGGCTCTTT GGTTTCTTCA TCTATCACAT 
    CTGGAATCTG CTCTCAGGAA AACAGAGCTA CTTCAGTATG TTGTAAAAGG 
    TTGCTGCCTG CTGCTGGTGA TGGGCATATT CTTGTCATGA ATGATAAAAG 
    TTTACAGTTC GCTTGTAAAC TTTGTAACTA TTATGACCCC ACTAAGATTA 
    TTGCCTGTAC ACCTGGTCCT CATTCATTCG AGTCTGATTC AGTGACTAAG 
    GGCCTCAAGA TTCTACAGAA TTTGGCTGAT CCCTCTTATC TATTCATTGG 
    AGGTGAACAT AAACTATCAG TTCCATGGAC AAAATTGAGT CGAGTATTTT 
    GGTTTGCTGA TATTGATTCC AACGAATCAA TTAGCGAGCA AGTTGTCTTG 
    CAGAAGTTTT TCCAGCATAT TGCCATCAAG ACCTTGTCAG AAAAGATGTC 
    AGATTTGCAG GTCATCGTGA TCATGAATAA CGCAAAATTT GTTCAGTTAC 
    AGGTCGAAAG ATTGGCAAGA GAGTGCTTCT TATTTCTGGG TGAATCATTT 
    ATGTTTGATG AAGCAACTCT TGGATGGTTC TCGGATACCC CTAATTACCC 
    GAGAGGGATG CAAGTATCAG CACCAGTTGC TTACATCTTT AGCATGCATC 
    CTCCTACTGG CATTCAGTTT GGTGATTACG CATCAGAACT GCGCAAAGTT 
    TTATACAGCA ACTAGTTAGA CCATTATAGG TTATTTCCAC ATGTGAATAG 
    CTTTGGTCAA GCCATTTTGC GAACTGTAAT TTTTTGGTCA GTTCAGCTTT 
    TACAGAAGTG TAAGGCTTAC TTGAGTGCTA TCTGAATTAG AATTCACTAG 
    GGAACTTTAA CTGAAGGGAT GCTGTTTTAA ATGTTGGTTC CGAACTTAAA 
    TTGATGCCAA ATTTCCC

    Gene models with high sequence identity

    1. AT2G47680.1 [+] show detail - zinc finger (CCCH type) helicase family protein
      E-value: 4e-101; Score: 365.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 6.4e-06
    HMMPanther FAMILY NOT NAMED 6.4e-06
    HMMPfam Zinc finger, CCCH-type 3.7e-05
    HMMPfam Zinc finger, CCCH-type 6e-05
    HMMSmart Zinc finger, CCCH-type 4.5e-05
    HMMSmart Zinc finger, CCCH-type 0.0042
    superfamily CCCH zinc finger 2.2e-05
    superfamily CCCH zinc finger 0.0017
    ProfileScan Zinc finger, CCCH-type 14.324
    ProfileScan Zinc finger, CCCH-type 11.854

    See the detailed result >

    AT2G47680.1

    Model type
    Protein coding
    Short Description
    zinc finger (CCCH type) helicase family protein
    Computational Description
    zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR