K32119

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32119

Determination of introduced cDNA(s)

  • J033116C01 - Rice Full-length cDNAs - Original: J033116C01

    full reading [+] show sequence

    Nucleotide sequence: J033116C01 - full reading 
    GAGTGATGTG AAGCACAGCA GGTGATCGGA GAGACCATCT CTAATACTAG 
    GCCTCTACAC TCTTACTTGG CCACGGCGAG TTCTCGCCAT GGACGACGCA 
    TCGATTAGTA CTGTAAAGCC TACGCGCCGG CGCCGAGGCG CTGGGTGGCA 
    AGGTCGCAGC GCGCTGGCGC GAAGCCGACG CGGCCGTTCT GGAGGTCGTA 
    CTCCACCCAC ACGTTCTGCT GGTGGTGGTG CCCGATCACG TACGCCGACA 
    TGCCGGCCAT GTCCGAGTTG CCGAACGTCA GGCACCACAC CGCCTCCGCG 
    CCCACCTCGC CGCGCCGCTC GCCTGGCACC ATGTACAGGA GCTTCTCCCC 
    GGACACGGCC ACCTCCGCGC CGCGGAGTAC GAGGCCCACC TCCGGGAGGA 
    GGCCGCTCGC CGCCGCCACC CGGGCCTCCG GCCCGCGGAA GCACGCGTCG 
    AACGCGCCCT GGAACACGAA CCCTGGCTCT CCCAGCGGGG CCAGGAGCAG 
    GCGCGCCTGG CTCGTGAACT CGGCCTTGAG CGCCGCGTAG GCGTCGGCGA 
    GGAGGAAGGT GAACTGCGTG CCGGAGTCCA CCATTGTCTG CCCGGCGCCG 
    GTGTGGTCCG GCGTGAGCAC GGACTTTGGG ATGGGGAGCA GCGCGCAGCC 
    GACGCGGATG CCCTCCAGCT GCACGGAGTA TGCCACCCGG TCGAAGTACG 
    GCAGCGGCTG GGAGATCTCG ATCAGCGGCG TGTAGTTGAG CGGCGGAGCC 
    ACGCCGCCGT CGTCGCCGAG GAGGAGGACG CCGGGGCCCT CGCCTGGGGC 
    GATGCAGTAG GCGAAGCGAC GGGTGCCCGT CTGCGTCACG AAGGAGAGGG 
    TGCCCCGGTT CATGCCGAGG AGGCCGGTCG CCGCCTCCGA GACGTCCGTG 
    CCGGTGCCGT TGCTGTTGGT GGCGGTGGTC GACGAGTAGG AAGTGATGCA 
    ACCGAAGTAG GCGCCCACGG CCACGGGCGG GGCGCCGCCA GTGAGGAGGA 
    AGGTGTCGGT GGCGAGGACC CCGTCGGCCG AGGAGGCGTC GGCGTAGGAG 
    AGGGAGACGC GGCAGGCGTT CGACGGCGGC GTGTCACAGA ACGGCGGGAC 
    GGGGAGGTCG CGGCCGCGCC ACTCGCACGC CGTCGACGGG CAGGGGACCG 
    CGCCGTACGA GGAAGAACCC GACGCGTTGA ACGCCGGGGT CAGCGGCGGC 
    GCGTAGCTCC CGTTGCAGAG CAGCCACGAG AGCTCGCTGC CGGTGTCGAG 
    CACCATCGTC ACGTTCTGCG GTGGCGTGCC GACGGCCACC GGCACCGTCA 
    GGCTCACATT GTGCCGGAAC CGGAGCCTGT TCGCCGCCGG CGCCTCCAAC 
    TCCACCTCCT GCACCCGCAC CTGCAGCGGG AGGACCGTGC CCGCCGGCGA 
    CCTCCCTTCT CCGCCGCTCG CAAGAAAGAC GCAGAGGCAG AGCAGAACAA 
    GAGACGCCTC CATGACGCGC GCGCGCGGCC GGCCAACGCA GCCACCCTTA 
    CGTTTTACCT CTCAAAAGCG CGCGTTAAGC GAGACCAAAC TCTGCAAGAA 
    TGCAAACGGC AACGCACTCT GGTTAATTCA TCGGATGCAC CAGCATCCGG 
    CAATTACACC ATCACTACAC CTTCTCCTCC TCCTCCTCCT CCTCGTGGCA 
    TCGACATCTC CATCATTAGC GTCACCTTCG CGAGCGTTTT GATCTTTGCA 
    GATGTGTGTG TTTGGTGTAG CAGAGCAGTA GAGCAGCACA GTACACTACG 
    CCTACTCGCC ATGTTGCATG GTCCTTTCCT TCACCCTGGG GCGGGCTGGT 
    CCCGTGCGTG CGTGTGGGGG GCTCTGCAGC TGCAAACATG TACAGGAGGT 
    GAAGTACTAC GTACTTCTAC GTGGAGGGAT CACGGATCTC ATCTCATAAA 
    TACGCTAGTC CGGCCGGGGC AGCGAGGACT TTCAGCACAG ATGCTCGTTG 
    TCGATGGCAC CATCCGTTGT TAAGTTTGTC AAAGGAGATC TTTCTGTGTT 
    ACTATTGGCT CC

    Gene models with high sequence identity

    1. AT2G39710.1 [+] show detail - Eukaryotic aspartyl protease family protein
      E-value: 4e-108; Score: 389.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidase A1 0.000091
    HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 1.5e-75
    HMMPanther Peptidase A1 1.5e-75
    Gene3D Peptidase aspartic, catalytic 0.000000000037
    Gene3D Peptidase aspartic, catalytic 2.9e-29
    superfamily Peptidase aspartic 5.2e-77
    PatternScan Peptidase aspartic, active site 0
    Coil coiled-coil 0

    See the detailed result >

    AT2G39710.1

    Model type
    Protein coding
    Short Description
    Eukaryotic aspartyl protease family protein
    Curator Summary
    Encodes a Cysteine-rich peptide (CRP) family protein
    Computational Description
    Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G02190.1); Has 2560 Blast hits to 2551 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 620; Fungi - 65; Plants - 1821; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR