K32146

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32146

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32146

Determination of introduced cDNA(s)

  • J023038D03 - Rice Full-length cDNAs - Original: J023038D03

    full reading [+] show sequence

    Nucleotide sequence: J023038D03 - full reading
    GGGAGCTCGA GCGTGGCGGC GGAAGCGCGG CGAGGTTCAG CAGCGGGGAT 
    CGGGGAGGCG AGCCGGCCGG CAGAAGTGCG GAGGCGGAGC ACAGCGAGGA
    GGGAGACGAA CTGGTTGGCC ACTTTGCCTC AACCATATAC AAAAATAGTG
    TTTCACCGGA TGTTCATCTT GCTGCTCTTT TTTTCCCTCA AAACTGTTCG
    TAGATCGACC AGGAATTCGC GATGGTTGCG CTCTCCAAGT TAGTGCTGAT
    CACTGCAGTG GCGCTGCTGG GCTGGGCGTA CAAGGTCGCG CGGCCGCCGC
    CGCCGCCGAT CTTGGGCGGT CCGGGAGGGC CACCGGTCTC CTCTCCGAGA
    GTCCAGCTCA AGGACGGCCG GCACCTGGCC TACAGGGAAG CCGGGGTCGG
    CAGGGAGATC GCCAAGTACA AGATCATTTT CTCCCATGGC TTCGCCTCCA
    CCAAGGAATC CGACTTCCCG GTGTCCCAAG AGCTGGCAGA GGAGCTGGGG
    ATTTACCTGC TGTACTTCGA CAGGGCTGGG TATGGCGACA GCGACGCCAA
    CCCGAAGCGG GGGCTGAAGA GCGACGCCAC GGACGTCGAG GAGCTCGCCG
    ACAAGCTGCA GCTCGGGGAG AAGTTCTATG TGGTTGGGAC TTCCATGGGC
    GGCTACGTTG CGTGGAGCTG CCTCAACTAC ATCCCTTACA GGCTGGCCGG
    CGTGGCGCTG GTCGTGCCGG CGGTGAACTA CTGGTGGCCG ATGCCCGCCA
    GTGTGTCGGC CAGTGCGTAC CGCAAGCTGG ACGTCGGGGA CCGGAGGACG
    TTCTGGATCG CGCACCACAT GCCTTGGCTG TTCTACGCCT GGTTCAATCA
    AAAGTGGTTC AGGATCTCAC CGATCGTGGA GGGGAAGCCC GAGGCTTTCA
    CTGAAAAGGA CTGGGAGATC CTAGCTGAGA TTCAGAGAAC TGGCCAATTG
    GACAGGGGGA GGGCGACGAA GCAGGGAGCC TACCACTCGC TGTGCCGCGA
    CGCGACGATC CTGTTCGGGG CGTGGGAGTT CGACCCGACG GCGATCGAGA
    ACCCGTTCCC CAACGGGGAC GGCGTCGTCA GCATCTGGCA AGGGCGCGAG
    GACAAGATCG TGCGGGTGGA GGCGCAGCGC TACGTGGCGG AGAAGCTCCC
    GTGGGTACGG TACCACGAGC ACCCCGAGGG CGGCCACCTC TTCATGTGCG
    CCGACGGGTT GGGCGACAAG ATCGTCCGGG AGCTCCTGCT CGGCGAGGAG
    CCGCGAGATT TGTAGACAGA TCGAGTTCGT GTCCTGTTTC GCTACACAGA
    GAGGGGAACA CAAACTCACA GATTGGGGAG GAATATAGGT CCAAGCGGTG
    CTTGTAGTTG TTGATGGAAT AAACCTCCGA TTTGCTAAAC TAGAAAATCG
    AACTTAAAAT CCTGTGAATT TCTAACTTCT GATATGCACC GCAGTCTGTG
    CTCCGATCAG GCTAGTGTTG AATATATAGA TTGTGTTTTC TTTTCCGCGT
    AGGTGAATTA AAGACTGTTC ATTCACAACC GTTCATACAA AACAATAAAT
    CGGCATAATT AAATTCG

    Gene models with high sequence identity

    1. AT3G48410.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 7e-89; Score: 325.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 4.4e-38
    Gene3D no description 8.9e-28
    HMMPanther ALPHA/BETA HYDROLASE RELATED 0.000000000033
    HMMPfam Alpha/beta hydrolase fold-1 0.000000009

    See the detailed result >

    AT3G48410.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G36290.1); Has 1039 Blast hits to 1035 proteins in 267 species: Archae - 10; Bacteria - 561; Metazoa - 10; Fungi - 51; Plants - 319; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR