K32246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32246

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32246

Determination of introduced cDNA(s)

  • J013124L02 - Rice Full-length cDNAs - Original: J013124L02

    full reading [+] show sequence

    Nucleotide sequence: J013124L02 - full reading 
    GAAGGCCCAA TCACCAGCTG CCACTCTCAA GAACCTGACT TTGGATCGCT 
    ATCCCTTTTG CTTCTTATTA GTGCTCAGGG AAAGAAAGCT ATAGCAGTAG 
    CTAAATAAGC CAGAGAGAGG CTAAGAGAGA GAGAGGTGAG GGGAGAGAAG 
    AAATCCTCGC AGAATTCGAG CAAGAACCGA GGGAGATCGA TCGCCTCTTG 
    TCCTCGTTCC GAGGCAGAGA TCGACCTGAA GTGAGCTGAG CTGCGGCAAG 
    GAGGAGGAGG AGGAGGAGGA GGAGAAGGAG ATTGGAGATG ATGATGAGGG 
    ATGTGTGCAT GGAGGTGCTG CCTCCGATGG ACCACTACGC GTCGAGGGGG 
    AACTGGTTCA TGGCGCGCAA GTGGTCGCCG GAGGAGAACA AGCAGTTCGA 
    GCGGGCGCTC GCCGGGCTGG ACCTGCGGTG CCCGGACTGG GACCGGGTGG 
    CGCGCGCCAT CCCGGGCAGG TCGGCGCTCG AGGTCATGAA CCACTTCAGG 
    GACCTCGAGC TCGACGTCCA GCAGATCGAG AATGGCATGG TGCCCTTCCC 
    GGTCTACGGC GCCGCCGCCG CCGGCGGCGC GTTCACACTG CAGTGGGATG 
    GCGCCCATGG CGTCGGGGAC TTCAGGAACG CGTACCGGTT CGGCGGCGGC 
    GGCGGCGGGA AGCGGCACTT CGGCCGTACG CCGGAGCAGG AGAGGAAGAA 
    AGGCGTGCCA TGGACGGAGG AGGAGCACAA GTTGTTCCTC TTAGGACTGA 
    AGAAATATGG GAAAGGGGAT TGGAGGAACA TATCCCGCAA TTTCGTGCAG 
    ACGAGGACGC CGACGCAGGT TGCCAGCCAT GCGCAGAAGT ATTTCATCAG 
    GCTCAACTCC GGTGGCAAGG ACAAGAGGAG ATCCAGCATC CATGACATTA 
    CCACGGTTAA CCTGACGGAT GACCGGCCTC CCTCGCCATC ACAGTCCTCC 
    TTGATCAGCA ATCAGTCCAA CACATCAACT CTGACCGCAG CGGTTGCCCC 
    CTTCTCATCG ACGGCCGATG TCAAGCCACA GAATGCCGCG AATGCGTCCT 
    TCAATTCGCC AAGCCGGACA CTTGGGATGG CGGGTTACGG GATGGGATTG 
    CAAGATCAAG GATTGCAGTG TGGTGGTCCT CTACATGATC AGTTGGCCGC 
    GAGCCGAAGC ATATTGTTTT AGATGAAACC AATCCAGGCA GCACCATGGA 
    TCAGATGTCT AGTGTAATAT TGCCCTGCTT GTAGCTTCAT CACTACCTGT 
    ATTGAAGTAA TTAATTATGG GGAATTTTTC GGAACATAAC AGAGGGGGTG 
    TGGAGGGATC TTTGTGCCAT GTTGGTGACT GATAACCTGT GATCCATAAT 
    TGTTGGCAAT ACTGAGAATG TAACGAAACG AACGTCAAGA ACTTGATGCC 
    GGTGGTATTT TCAGACAGTG ATTGCTGCTA GTGCTGAACA CTGATCATGC 
    ATGAAGTGGA CTTTGTATTC AATCATGGAT CCAGCTTTTG TGAGGTGGAT 
    GAGGAGAATT CTATTCACTA TGTTCTTCTG GTCAGTGATG CACTGAGAAA 
    CACCGGTTGC CATCTGATTG AGGGGTTTCA GATCATGCTG TACTTCACAC 
    ATACTTATCC ACAGTTCTAT CAATTTGCTC ATTGGTGCTC CCCCCATTTG 
    ATGTTTGCAT AGAATTTATT TGGATAAACG GAAAATAAGT TTGCTCTGAG 
    TCATTCAGCA TTATTACTAC TTTCAGTTGC TCATCTAGTC AACTTTTCTT 
    GTTTGTAGCT TCATTTTTAT AATAAAATAA TAACTTCTTT TTTTT

    Gene models with high sequence identity

    1. AT2G38090.1 [+] show detail - Duplicated homeodomain-like superfamily protein
      E-value: 1e-50; Score: 198.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MYB-like 6.284
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 18.359
    Gene3D Homeodomain-related 0.00061
    HMMPfam Myb, DNA-binding 2.7e-07
    HMMPfam Myb, DNA-binding 6.6e-13
    HMMPanther TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED 0.00014
    HMMSmart SANT, DNA-binding 7.5e-05
    HMMSmart SANT, DNA-binding 3.4e-13
    superfamily Homeodomain-like 1.1e-16
    superfamily Homeodomain-like 3.7e-11
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 1.7e-22

    See the detailed result >

    AT2G38090.1

    Model type
    Protein coding
    Short Description
    Duplicated homeodomain-like superfamily protein
    Computational Description
    Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G58900.1); Has 1891 Blast hits to 1883 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 3; Plants - 1444; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR