K32246

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32246

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32246

Determination of introduced cDNA(s)

  • J013124L02 - Rice Full-length cDNAs - Original: J013124L02

    full reading [+] show sequence

    Nucleotide sequence: J013124L02 - full reading
    GAAGGCCCAA TCACCAGCTG CCACTCTCAA GAACCTGACT TTGGATCGCT 
    ATCCCTTTTG CTTCTTATTA GTGCTCAGGG AAAGAAAGCT ATAGCAGTAG
    CTAAATAAGC CAGAGAGAGG CTAAGAGAGA GAGAGGTGAG GGGAGAGAAG
    AAATCCTCGC AGAATTCGAG CAAGAACCGA GGGAGATCGA TCGCCTCTTG
    TCCTCGTTCC GAGGCAGAGA TCGACCTGAA GTGAGCTGAG CTGCGGCAAG
    GAGGAGGAGG AGGAGGAGGA GGAGAAGGAG ATTGGAGATG ATGATGAGGG
    ATGTGTGCAT GGAGGTGCTG CCTCCGATGG ACCACTACGC GTCGAGGGGG
    AACTGGTTCA TGGCGCGCAA GTGGTCGCCG GAGGAGAACA AGCAGTTCGA
    GCGGGCGCTC GCCGGGCTGG ACCTGCGGTG CCCGGACTGG GACCGGGTGG
    CGCGCGCCAT CCCGGGCAGG TCGGCGCTCG AGGTCATGAA CCACTTCAGG
    GACCTCGAGC TCGACGTCCA GCAGATCGAG AATGGCATGG TGCCCTTCCC
    GGTCTACGGC GCCGCCGCCG CCGGCGGCGC GTTCACACTG CAGTGGGATG
    GCGCCCATGG CGTCGGGGAC TTCAGGAACG CGTACCGGTT CGGCGGCGGC
    GGCGGCGGGA AGCGGCACTT CGGCCGTACG CCGGAGCAGG AGAGGAAGAA
    AGGCGTGCCA TGGACGGAGG AGGAGCACAA GTTGTTCCTC TTAGGACTGA
    AGAAATATGG GAAAGGGGAT TGGAGGAACA TATCCCGCAA TTTCGTGCAG
    ACGAGGACGC CGACGCAGGT TGCCAGCCAT GCGCAGAAGT ATTTCATCAG
    GCTCAACTCC GGTGGCAAGG ACAAGAGGAG ATCCAGCATC CATGACATTA
    CCACGGTTAA CCTGACGGAT GACCGGCCTC CCTCGCCATC ACAGTCCTCC
    TTGATCAGCA ATCAGTCCAA CACATCAACT CTGACCGCAG CGGTTGCCCC
    CTTCTCATCG ACGGCCGATG TCAAGCCACA GAATGCCGCG AATGCGTCCT
    TCAATTCGCC AAGCCGGACA CTTGGGATGG CGGGTTACGG GATGGGATTG
    CAAGATCAAG GATTGCAGTG TGGTGGTCCT CTACATGATC AGTTGGCCGC
    GAGCCGAAGC ATATTGTTTT AGATGAAACC AATCCAGGCA GCACCATGGA
    TCAGATGTCT AGTGTAATAT TGCCCTGCTT GTAGCTTCAT CACTACCTGT
    ATTGAAGTAA TTAATTATGG GGAATTTTTC GGAACATAAC AGAGGGGGTG
    TGGAGGGATC TTTGTGCCAT GTTGGTGACT GATAACCTGT GATCCATAAT
    TGTTGGCAAT ACTGAGAATG TAACGAAACG AACGTCAAGA ACTTGATGCC
    GGTGGTATTT TCAGACAGTG ATTGCTGCTA GTGCTGAACA CTGATCATGC
    ATGAAGTGGA CTTTGTATTC AATCATGGAT CCAGCTTTTG TGAGGTGGAT
    GAGGAGAATT CTATTCACTA TGTTCTTCTG GTCAGTGATG CACTGAGAAA
    CACCGGTTGC CATCTGATTG AGGGGTTTCA GATCATGCTG TACTTCACAC
    ATACTTATCC ACAGTTCTAT CAATTTGCTC ATTGGTGCTC CCCCCATTTG
    ATGTTTGCAT AGAATTTATT TGGATAAACG GAAAATAAGT TTGCTCTGAG
    TCATTCAGCA TTATTACTAC TTTCAGTTGC TCATCTAGTC AACTTTTCTT
    GTTTGTAGCT TCATTTTTAT AATAAAATAA TAACTTCTTT TTTTT

    Gene models with high sequence identity

    1. AT2G38090.1 [+] show detail - Duplicated homeodomain-like superfamily protein
      E-value: 1e-50; Score: 198.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MYB-like 6.284
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 18.359
    Gene3D Homeodomain-related 0.00061
    HMMPfam Myb, DNA-binding 0.00000027
    HMMPfam Myb, DNA-binding 0.00000000000066
    HMMPanther TRANSCRIPTIONAL ADAPTOR 2 (ADA2)-RELATED 0.00014
    HMMSmart SANT, DNA-binding 0.000075
    HMMSmart SANT, DNA-binding 0.00000000000034
    superfamily Homeodomain-like 1.1e-16
    superfamily Homeodomain-like 0.000000000037
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 1.7e-22

    See the detailed result >

    AT2G38090.1

    Model type
    Protein coding
    Short Description
    Duplicated homeodomain-like superfamily protein
    Computational Description
    Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G58900.1); Has 1891 Blast hits to 1883 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 3; Plants - 1444; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR