K32251

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32251

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32251

Determination of introduced cDNA(s)

  • J033133I03 - Rice Full-length cDNAs - Original: J033133I03

    full reading [+] show sequence

    Nucleotide sequence: J033133I03 - full reading 
    GGCCCGTTTC CCCTTCTCGG CTTCGTCGCC TTCTTCTCCT CCTCGAACAG 
    AAGAGTCGGA CCCTTCCAAA AGCGACGGGT AGATTGCCAG CCAGCCCAAC 
    TCCTTCCTAC TCCTGGTACT ACTCCTACAT AAGAAGAAGT CCTCCCGACT 
    CCCATCGCGA TCCCTCGCCC TGCTCTGCTG CAGTGGGAGT AGGACAAGCG 
    GCCGCGTCGC TCTCCGGTTC CATCCATCCA CGGAGTAGTA GAGTGTGCCA 
    GTATTAGTAC GAGTGGCAGT TTATTCTGCG TCCTGCTTCG TTCGTCGGTG 
    AGGAGGAGGA GGAGGAGAGA GGGAGGGGGG CAGAGTGGGC GCGGCGGCAT 
    TTCGGAGGGG GATGTGTAGC GGCGGCGGCG GCTAGGGTGG TGGTTTGCTG 
    TTCTTCGAGG ACAAATATGG CTACTATTCA AGATATAGGT GTCTCTGCAG 
    CTATCAACAT ACTGAGTGCC ATCACTTTCC TGCTAGCGTT TGCTTTCCTG 
    CGACTACAGC CCATCAACGA TAGGGTTTAC TTCCCAAAGT GGTATCTCAA 
    AGGTGCAAGA GAGAGTCCAA GTCATGGGGG TGCATTTGTG CGGAAGTTTG 
    TCAATTTGGA CATGCGATCA TACTTGAAGG TCTTAAGTTG GATGCCTGCT 
    GCTCTCAAAA TGCCAGAGGA TGAGTTAATT AGCCATGCAG GCCTTGATTC 
    AGCTGTCTAT CTGCGGATCT ACTTAATAGG GCTTAAAATA TTTGCTCCAA 
    TCACAGTTCT AGCATTTATT ATTCTTGTGC CTGTTAATTG GACCAATATT 
    ACCCTTCAAA GCTCGAAGGT GCAGCACAGT GATATTGACA AACTTTCAAT 
    ATCCAACATA CCTGTAGGGT CAAAGAGGTT CGCAGCTCAC CTGACCATGG 
    CTTATGTTTT CACATTTTGG ACATGCTATG TGCTGTTACG GGAGTATGAA 
    ATAGTGGCAA CAATGCGTCT GCGCTTTCTT GCATCAGAGA AGCGCCGCCC 
    AGATCAGTTC ACGGTCCTTG TGCGGAATAT ACCGCCTGAT CCTGATGAAT 
    CAATTGGTGA GCTTGTGGAA CATTTCTTCC TTGTAAACCA TCCTGACCAT 
    TATCTTACGC ACCAGGTTGT CTATAATGCA AATAAGCTTG ATAAGATGGT 
    CAAAGAGAAG AAGAAAATGC AGAATTGGCT TGATTACTAT CAGCTGAAAT 
    ATGAAAGAAA TACATCTCAA AGGCCTACTA CAAAGACTGG TTTTCTTGGA 
    TGTTTTGGTT CAAAGGTGGA TGCTATTGAA TACTACACAT CTGAAATTGA 
    GAGGATAGAA AAGGAAGAAA CTGATGAACG TGGAAAGATT ATGAAGGATC 
    CAAAATCAGT TGTGCCAGCA GCCTTTGTTT CCTTCCGATC GCGGTGGGGA 
    GCAGCAGTGT GTGCTCAGAC ACAGCAAACC AGTAATCCAA CTGTCTGGTT 
    GACCGAGTGG GCCCCAGAAC CTCGTGATGT CTATTGGGAT AACCTCTCTA 
    TTCCTTTTGT TTACCTGACA ATTAGGAGGC TGATAATTGC GGTTGCATTC 
    TTCTTCCTGA ACTTCTTTTA TGTGCTCCCG ATTGCATTTG TTCAGTCCCT 
    TGCAAATATT GAAGGGATTG AGAAGGCAGC TCCATTTCTG AAGCCTTTGA 
    TTGAAATGCG TACTATTAAA TCATTCATCC AAGGATTTCT GCCAGGAATT 
    GCTCTGAAGA TTTTCCTTAT ATTGCTCCCT AGCATATTAA TGTTTATGTC 
    TAAAGTTGAA GGATTGACAT CGGTGTCCTC ACTGGAGAGG AGATCTGCTT 
    TTAAGTACTA TATCTTCTTG TTCTTTAATG TATTCTTGGG AAGCATTATT 
    GCAGGATCTG CTTTAGAGCA GCTCAAAACA TTTCTTCACC AATCAGCAAA 
    TGAAATACCA AGGACAATTG GTGAAGCAAT TCCAATGAAA GCAACCTTTT 
    TTATAACATA TGTAATGGTT GATGGTTGGG CTGGGGTAGC TGGTGAAATT 
    TTAAGATTGA AACCATTGAT AATCTTCCAC TTGAAAAACT TTTTCTTGGT 
    CAAGACTGAG AAAGACAGAG AAGAAGCAAT GGACCCTGGA AGCATTGGTT 
    TTGACTCAAA TGAGCCTCAA ATACAGCTCT ATTTCTTGCT CGGACTTGTC 
    TATGCTGTGG TGACACCATT TTTGCTTCCT TTCATATTAA TATTCTTTGG 
    GTTAGCATAT GTGGTATACC GTCACCAGAT AATAAATGTG TACAACCAAG 
    AATATGAAAG TGCAGCAGCA TTTTGGCCAA GTGTTCATGG ACGCATAATT 
    GTAGCATTAA TCGTATCACA GCTGCTTCTC CTTGGATTAC TAAGCACAAA 
    AGGTGCTGGC CAGTCAACAC CGGTGCTCCT TGTTCTCCCT GTTGTAACCT 
    TTTATTTCTA TAAATACTGC AAGAATCGCT ATGAGCCTGC TTTTGTGGAA 
    TATCCATTAC AGGATGCAAT GCGGAAGGAT ACCCTAGAAC GCGCAAGAGA 
    GCCAGGGTTC GACCTCAAAG GATACCTGAT GAATGCCTAC ATCCACCCGG 
    TGTTCAAAGG CGACGAGGAC GACGAGAAGT TCTCCATCTC CGACGAACCA 
    GAGGCGGAGC AGGTTCTCGT GGCGACAAAG CGCCAGTCCA GACGGAACAC 
    CCCAGTTCCG AGTAAATACA ATGGCTCTGA ATCACCTTCC CTTGCTGAAA 
    TTGTAAATGA TCAACGGCTA TAAATATAAT AGAGGTGATG GCTAGTAGGT 
    TTGTAGTTTC GACATGTACA TTAAAGAGCA CCAATAATGG TTTTGAGGAT 
    CGGTTTTGTT TACAGCAAGG AGGAATGGCA AAATATATAT ATATATACCA 
    ATGGGCTCC

    Gene models with high sequence identity

    1. AT4G22120.6 [+] show detail - ERD (early-responsive to dehydration stress) family protein
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RSN1(YEAST)-RELATED PROBABLE MEMBRANE PROTEIN 9.6e-288
    HMMPanther PROBABLE MEMBRANE PROTEIN DUF221-RELATED 9.6e-288
    HMMPfam Protein of unknown function DUF221 2.5e-101

    See the detailed result >

    AT4G22120.6

    Model type
    Protein coding
    Short Description
    ERD (early-responsive to dehydration stress) family protein
    Computational Description
    ERD (early-responsive to dehydration stress) family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G04340.1).
    Link
    InterPro Scan - TAIR