K32311

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32311

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32311

Determination of introduced cDNA(s)

J033133D12 - Rice Full-length cDNAs - Original: J033133D12

full reading [+] show sequence

GCCCTTTCCT TCTCATTCCT CGCGGGGAGG GGCGGCGCCG ACGCCTCATC 
GACTAGTTCA CTCCATCTCC ATCTCCATCT CCATCTCCAT CTACATATAC 
GGCCGCTTCC AACTGCAATC TCCTGCCTGC CCAGCGATTC TTCCCACGAT 
TTCCTTTCCT GCTTTTCTCA TCCCTTTTGT TTCTTCACTC CGGCTCACCG 
CGCGAACCAA TCTTCTGCCT TCACACAACC AATTCATCAA GCAGATCGAG 
ATGGAGTGCG AGAGCAACTA CAGCAAGGAG CAGAGGCTCA ACGGCGACAG 
CCTCGTCTTC GACCTTGATG ACACGCTGTA TCCGGTGACC TCCGGCATTG 
GAGCCGACGT CGTAAGGAAC ATCCAAGCTT ATATGATCGA AAAGCTTGGT 
GTGGAAGAGA GCATCAGTTT GGAGCTATGC GTCCTCCTCT ACAAGCAGTA 
TGGAACTACC ATGGCCGGTT TGAGGGCTGT TGGGTACCAG TTTGATTATG 
ACGACTTCCA CAGCTATGTT CATGGAAGGT TGGCTTATGA GAAAATTAAG 
CCTGATCCAG TACTTAGGAA CATTCTCCTA AGCTTGCCAA TCCGCAAAGT 
TGTCTTCACA AATGGTGACA GAATTCATGC TTCAAGGGCC CTCAAGAGGC 
TAGGAATAGA AGATTGCTTT GAAAGAGTTG TGTGCTTTGA GACACTGAAC 
CCAACATCAT CCTCTCTTTC GGCAGCTGGT CAGGTTGAAA TTTTTGATAT 
AATGAAGCAT CTGGCTCATC CAGAGCCTGG GGTTGAACTA CCAAAGTCGC 
CAATCCTGTG CAAGCCAAAT ATAGATGCCA TGCGGCAAGC TCTCAAGGTT 
GCCTCCATCA ATCCGAAGAC ATCGATATTG TTTGATGACA GCGCCAGGAA 
CATCCAGGCT GCGAAGCTAA TAGGAATGTA TACTGTCCTG GTTGGAACTT 
CTGAAAGAAT AAAGGGTGCT GACCATGCGT TGGAAAGCCT TCACAACATG 
AAGGAAGCAT TGCCTGAGCT GTGGGATGAA GCTGTGAAGG ATGAGGATGT 
CAGGAAGTCA AGCAAAGTCG GAATTGAGAC ATCTGTGATC GCTTAAAACT 
CCCATGAATG TTTCTGATGG AGAACAGCAT GAGATGAGTG GATCATTTTT 
CAGAGCTCAT CTCTGCACTT TCTTATGTCT GAAAGTAGAT GTGCTAATTT 
AGGGGAGATT TTACTCTTCT TCATGTACTG TGTGAGTGTG TGACTGCCTG 
TAATAAATAA ATAAATAAAT GCCATCTATG AACTGACAAT ACAATTCCTG 
GCG

Gene models with high sequence identity

AT5G02230.2 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
E-value: 2e-92; Score: 336.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	no description	6.9e-07
HMMPanther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	8e-07
superfamily	HAD-like	4.8e-27
HMMTigr	Pyrimidine 5-nucleotidase	2.8e-83
HMMTigr	HAD-superfamily hydrolase, subfamily IA, variant 3	2e-11

See the detailed result >

AT5G02230.2

Model type: Protein coding
Short Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Computational Description: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink).
Link: InterPro Scan - TAIR