K32318

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32318

Determination of introduced cDNA(s)

J013091K12 - Rice Full-length cDNAs - Original: J013091K12

full reading [+] show sequence

GGCCCCCGCA CCACCACTCC CTCCTCCTCC ATCTCCTCCG CTCCCGATCT 
CACAACCACC GACTCCTCCT CCTCGCGCGG CGGCGGCGGC GGCGTGAGCC 
AGCAGCAGCC ATGGTGCTGT TCTCGGTGAC GAAGAAGGCC ACCACGCCCT 
TCGACGGCCA GAAGCCCGGC ACCTCCGGCC TCCGCAAGAA GGTTACTGTA 
TTCCAGCAGC CTCATTACCT CCAGAACTTT GTGCAATCCA CATTTAATGC 
CCTTCCTGCC GACAAAGTAA AAGGTGCAAC CATTGTTGTG TCTGGTGATG 
GCCGCTATTT CTCGAAGGAT GCTGTTCAGA TCATTACAAA AATGGCTGCC 
GCTAATGGAG TAAGACGTGT TTGGGTTGGA CAAAACAGCC TCATGTCTAC 
TCCAGCTGTA TCTGCTGTTA TCCGTGAAAG AGTTGGTGCA GATGGATCAA 
AGGCTACTGG TGCCTTCATT TTAACAGCTA GTCACAACCC TGGTGGTCCT 
ACTGAGGACT TCGGAATCAA ATATAACATG GAAAATGGTG GACCTGCCCC 
TGAATCGGTT ACTGATAAGA TCTTCTCTAA TACAACGACA ATTACTGAAT 
ATCTCATCGC GGAAGACCTT CCAGATGTCG ATATTTCTGT TGTAGGTGTC 
ACTACCTTCA GTGGACCTGA AGGCCCTTTT GATGTTGATG TTTTTGACTC 
TACTATAGAT TACATAAAGT TAATGAAGAC AATCTTTGAC TTTGAGTCAA 
TTAAAAAGCT TCTGGCATCT CCGAAGTTTA CATTCTGTTA TGATGCTCTC 
CATGGTGTTG CTGGGACTTA CGCAACACGC ATCTTTGTGG AAGAGCTTGG 
TGCTGCTGAA AGCTCATTGT TGAACTGTGT TCCGAAGGAA GACTTTGGAG 
GGGGCCATCC AGATCCTAAC CTCACCTATG CAAAAGAACT TGTTGACCGG 
ATGGGCCTTG GAAAATCCTC AAATGCTGAA CCCCCAGAAT TTGGTGCTGC 
AGCTGATGGT GATGCTGATC GCAACATGAT TCTGGGTAAA AGATTCTTCG 
TAACACCTTC AGATTCGGTT GCCATTATTG CAGCCAATGC TGTTCAGTCG 
ATTCCTTACT TTTCTTCTGG CCTTAAGGGA GTTGCCAGGA GCATGCCCAC 
ATCAGCTGCC CTTGTTGTTG TCGCTAAGAA TTTGAATCTC AAGTTCTTTG 
AGGTGCCTAC TGGGTGGAAA TTTTTTGGGA ACTTGATGGA TGCTGGAATG 
TGCTCAATTT GTGGTGAAGA AAGCTTTGGC ACTGGTTCTG ATCACATTCG 
TGAGAAAGAT GGTATTTGGG CTGTTCTAGC ATGGTTATCT ATTCTTGCTT 
TCAAGAACAA GGACAACCTT GGAGGCGATA AGCTTGTTAC TGTTGAAGAT 
ATTGTTCGCC AGCACTGGGG TACTTATGGT CGCCATTATT ATACACGATA 
TGACTATGAG AATGTTGATG CTGGAGCTGC TAAAGAACTT ATGGCAAACC 
TTGTCAGCAT GCAGTCGTCC CTTTCTGATG TTAACAAATT GATCAAGGAG 
ATTCGGTCAG ATGTTTCTGA TGTGGTTGCC GCAGATGAGT TTGAGTATAA 
GGATCCTGTT GATGGTTCTG TCTCCAAGCA TCAGGGTGTC CGGTACCTCT 
TCGGAGATGG TTCCCGGCTG GTGTTCCGCC TCTCTGGAAC TGGCTCTGTT 
GGTGCTACTA TCCGTGTCTA CATCGAGCAG TATGAGAAGG ATTCTTCCAA 
GACCGGCAGG GATTCGCAGG ATGCCCTTGC TCCTCTGGTT GATGTTGCAC 
TGAAGCTGTC AAAGATGCAA GAGTACACTG GCCGATCTGC TCCCACCGTC 
ATCACATAAA CTTTTCAAGA GCCATTCTAG AATGCTTTTG AGGCTACCCA 
TGAACTTTCT TTATGGCCTC CTGTTTGATA GCCTTTTTAC ATCTCTCCCC 
GAATAAACGT GTATGTATCA ACTGTTCTCG TTTTCTTGCC AATACTGCGT 
TTCTGCTGCA GGTCCGGTAA AGTGTGCGGC GATAATGTTG TCAGTTCTGA 
AACTGAAGAG GGTACTTTAT ATAAGCGATA TATCGATGTT TTTTTTGCTC

Gene models with high sequence identity

AT1G70730.3 [+] show detail - Phosphoglucomutase/phosphomannomutase family protein
E-value: 0; Score: 991.00

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	5.4e-22
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	5.4e-22
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	5.4e-22
FPrintScan	Alpha-D-phosphohexomutase, N-terminal	5.4e-22
superfamily	Phosphoglucomutase, C-terminal domain	5.4e-53
superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	3.3e-51
superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	3.5e-38
superfamily	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	1.4e-34
PatternScan	Alpha-D-phosphohexomutase, conserved site	0
Gene3D	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	5.7e-57
Gene3D	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	4.2e-40
Gene3D	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	2.2e-36
Gene3D	no description	1.7e-59
HMMPfam	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	5.4e-34
HMMPfam	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	4e-25
HMMPfam	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	1.6e-13
HMMPfam	Alpha-D-phosphohexomutase, C-terminal	8e-11
HMMPanther	PHOSPHOGLUCOMUTASE	2.6e-218
HMMPanther	PHOSPHOHEXOMUTASE FAMILY MEMBER	2.6e-218

See the detailed result >

AT1G70730.3

Model type: Protein coding
Short Description: Phosphoglucomutase/phosphomannomutase family protein
Curator Summary: Encodes a cytosolic phosphoglucomutase (PGM). Two Arabidopsis PGM proteins (AT1G70730/PGM2 and AT1G23190/PGM3) have high sequence similarities and redundant functions. Mature plants possessing a single cPGM allele had a major reduction in cPGM activity. Whereas pgm2 and pgm3 single mutants are undistinguishable from the wild type, loss of both PGM2 and PGM3 severely impairs male and female gametophyte development.
Computational Description: Phosphoglucomutase/phosphomannomutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G23190.1); Has 6668 Blast hits to 6655 proteins in 2105 species: Archae - 91; Bacteria - 4924; Metazoa - 519; Fungi - 202; Plants - 162; Viruses - 0; Other Eukaryotes - 770 (source: NCBI BLink).
Link: InterPro Scan - TAIR