K32321

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32321

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32321

Determination of introduced cDNA(s)

  • J033066O22 - Rice Full-length cDNAs - Original: J033066O22

    full reading [+] show sequence

    Nucleotide sequence: J033066O22 - full reading
    GACAAACGCG CCGACGGAGA GACGGGAGGG CAACGGGAGG GCTTAGCGCG 
    TCGCTCCCAA CGGTGATTCG AGCCAAGACC TAGCCGCCGC CATGGAGATC
    GTGAGATCCC ACCGGCAGAT CGCGGCGGAG GCGGCGGCCG GCGTAGGATG
    TGGCGGCGGG GCGGGAGGCC TGCCAACCTA CCGGGTGGCG CCGCAGCTGG
    AGGTGCGGTT GGAAGAGTTT GAGCTCTTCG CCATCGACCG CCTCCGAGTA
    TTGAAGGGGA TCGCCGACGG GCTCTCGCGA GGGAAGAGAC CGGAGGAAAT
    GGAGAAATTG GTCAAGGAAT TGTGGAAAGC CCATATGAGG CACCAGGATC
    CTACAGAGAC TTTGAACAAG GACATAATAT CTCACTTTGT TCTCCGTCTT
    GTCTACTGCA GAACGGAGGA GCTGCGGAAG TGGTTTCTCT CCATGGAGAC
    TACGCTTTTT CGCTATCGCT TTCGGCTCGA GAGTCCTGAA TCACAGAGGA
    TGCTTATGAG TGAGTTTCGA CTTCCATACA AAGCATTGCC ACACTCGGAA
    TTTGAGGCTG TCAAAGACAA GTTGAGCCAA GTTGCACGCA CCATTGGTCA
    ATCTGCAGCT GTTGAATCTG TGTTCTTCAA GGTGCCTTTT GAAGAAGTTC
    CAGATCTTGT TGCCAGCCGC CGAGTATTTC TTTCAAAAGG ATATGCTTAT
    GTTGCGATGA GTCAGGTTGT TTCGCTTGTG GTTACCCAAT TCCGCTGCAA
    TATCTCGAAG GCACTTGTTT TAACAAATAG AAAATGGACG GCCACCATTA
    AGGAACAAGA AAAGGATAGG TTGACTCCTA TTGTCGAAGC ATTGAGTAAT
    GCATATTTTG GACCTGATTA CTCTCAGCCA AAGGATGCTG TTGAGATTTC
    TCTGAAGGAT ATTGACCAAC TGGCTAAAAC TTCTTTCCCT CTTTGTATGC
    GCCACATGCT AGAGAAGTTG AGAGAAAACC ATCATCTGAA GCATGGGGGC
    AGAATGCAGT TTGGTCTTTT CCTTAAGGGA GCTGGACTAA AGTTGGAAGA
    TGCTCTAGCA TTTTGGAGGG CAGAGTTTTC TCAGAAGGTT GGCTCTGAGC
    GATTTGACAA GGAATATGCC TACAGTATCA GGCATAATTA TGGAAAGGAA
    GGAAAACGAA CAGATTACAC TCCGTATTCA TGTCAAAAGA TTATCTCTGC
    AACACCTGGT GTTGGTGATC ACCATGGTTG CCCTTATCGA CATTTTGGTG
    AAGACAACTT GAGAGCAGCT CTCAATAAAA TGGGAATCAG TGGTCATCCA
    TTAGAAGAGA TAATGGATAA AGTGAAGAAC AGGCACTACC AGCTAGCTTG
    CACGATGACT TTTGAGGCAG AACATGGTGT CTCATGTGAT ACTGGAATCA
    ATCATCCTAA TCAGTATTTC AGTGAAAGCC AGAAAGTCTT GAAAGCAAAG
    AATCAAGCAG TGCAGAGCCA AGGAACAACC TAAACTGTAA TGCTGCTGGC
    AAAAGTCAGT CCATCCAAAT GCGGAATTTC AGTTCGTATC AAGATTTCAT
    CCTTGCTGCT AATGATATGG AGAACAACAA TTACTAATCT TTATTCTGAT
    GCCTAGATGG AATTCTATTG CTTTGCACGG TTTCAGAATT CCAACGGCTG
    AATATGTCAT CCCCCAAAAG TGATGGATGT CCCTGTAAAC ATGACTTGAG
    CACAGAAAGT AGATAGAACC GTACAAGTAC GTACTTGTCA AAACCAAAGG
    AAACCATGAT TATGGATATC AAATTATTGT TTGTGTTGGT AAGTGGTAAC
    TATGTAACCA TGGTAACTAT GACCAGGGGG AGTTGTGAAC ACCTCATCAG
    TTAAGTTGCG CTGTAATGTT TCTGTAATCG AAAACTTGTT CGACAAAACA
    ATTGCGCTTC CAGATATGCA ATTTCATTAA TCTGCTTGAA CT

    Gene models with high sequence identity

    1. AT1G67320.2 [+] show detail - DNA primase, large subunit family
      E-value: 0; Score: 635.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR DNA primase, large subunit, eukaryotic 1.9e-202
    HMMPanther DNA primase, large subunit, eukaryotic/archaeal 1.6e-157
    HMMPfam DNA primase, large subunit, eukaryotic/archaeal 1e-89

    See the detailed result >

    AT1G67320.2

    Model type
    Protein coding
    Short Description
    DNA primase, large subunit family
    Computational Description
    DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238).
    Link
    InterPro Scan - TAIR