K32321

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32321

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32321

Determination of introduced cDNA(s)

  • J033066O22 - Rice Full-length cDNAs - Original: J033066O22

    full reading [+] show sequence

    Nucleotide sequence: J033066O22 - full reading 
    GACAAACGCG CCGACGGAGA GACGGGAGGG CAACGGGAGG GCTTAGCGCG 
    TCGCTCCCAA CGGTGATTCG AGCCAAGACC TAGCCGCCGC CATGGAGATC 
    GTGAGATCCC ACCGGCAGAT CGCGGCGGAG GCGGCGGCCG GCGTAGGATG 
    TGGCGGCGGG GCGGGAGGCC TGCCAACCTA CCGGGTGGCG CCGCAGCTGG 
    AGGTGCGGTT GGAAGAGTTT GAGCTCTTCG CCATCGACCG CCTCCGAGTA 
    TTGAAGGGGA TCGCCGACGG GCTCTCGCGA GGGAAGAGAC CGGAGGAAAT 
    GGAGAAATTG GTCAAGGAAT TGTGGAAAGC CCATATGAGG CACCAGGATC 
    CTACAGAGAC TTTGAACAAG GACATAATAT CTCACTTTGT TCTCCGTCTT 
    GTCTACTGCA GAACGGAGGA GCTGCGGAAG TGGTTTCTCT CCATGGAGAC 
    TACGCTTTTT CGCTATCGCT TTCGGCTCGA GAGTCCTGAA TCACAGAGGA 
    TGCTTATGAG TGAGTTTCGA CTTCCATACA AAGCATTGCC ACACTCGGAA 
    TTTGAGGCTG TCAAAGACAA GTTGAGCCAA GTTGCACGCA CCATTGGTCA 
    ATCTGCAGCT GTTGAATCTG TGTTCTTCAA GGTGCCTTTT GAAGAAGTTC 
    CAGATCTTGT TGCCAGCCGC CGAGTATTTC TTTCAAAAGG ATATGCTTAT 
    GTTGCGATGA GTCAGGTTGT TTCGCTTGTG GTTACCCAAT TCCGCTGCAA 
    TATCTCGAAG GCACTTGTTT TAACAAATAG AAAATGGACG GCCACCATTA 
    AGGAACAAGA AAAGGATAGG TTGACTCCTA TTGTCGAAGC ATTGAGTAAT 
    GCATATTTTG GACCTGATTA CTCTCAGCCA AAGGATGCTG TTGAGATTTC 
    TCTGAAGGAT ATTGACCAAC TGGCTAAAAC TTCTTTCCCT CTTTGTATGC 
    GCCACATGCT AGAGAAGTTG AGAGAAAACC ATCATCTGAA GCATGGGGGC 
    AGAATGCAGT TTGGTCTTTT CCTTAAGGGA GCTGGACTAA AGTTGGAAGA 
    TGCTCTAGCA TTTTGGAGGG CAGAGTTTTC TCAGAAGGTT GGCTCTGAGC 
    GATTTGACAA GGAATATGCC TACAGTATCA GGCATAATTA TGGAAAGGAA 
    GGAAAACGAA CAGATTACAC TCCGTATTCA TGTCAAAAGA TTATCTCTGC 
    AACACCTGGT GTTGGTGATC ACCATGGTTG CCCTTATCGA CATTTTGGTG 
    AAGACAACTT GAGAGCAGCT CTCAATAAAA TGGGAATCAG TGGTCATCCA 
    TTAGAAGAGA TAATGGATAA AGTGAAGAAC AGGCACTACC AGCTAGCTTG 
    CACGATGACT TTTGAGGCAG AACATGGTGT CTCATGTGAT ACTGGAATCA 
    ATCATCCTAA TCAGTATTTC AGTGAAAGCC AGAAAGTCTT GAAAGCAAAG 
    AATCAAGCAG TGCAGAGCCA AGGAACAACC TAAACTGTAA TGCTGCTGGC 
    AAAAGTCAGT CCATCCAAAT GCGGAATTTC AGTTCGTATC AAGATTTCAT 
    CCTTGCTGCT AATGATATGG AGAACAACAA TTACTAATCT TTATTCTGAT 
    GCCTAGATGG AATTCTATTG CTTTGCACGG TTTCAGAATT CCAACGGCTG 
    AATATGTCAT CCCCCAAAAG TGATGGATGT CCCTGTAAAC ATGACTTGAG 
    CACAGAAAGT AGATAGAACC GTACAAGTAC GTACTTGTCA AAACCAAAGG 
    AAACCATGAT TATGGATATC AAATTATTGT TTGTGTTGGT AAGTGGTAAC 
    TATGTAACCA TGGTAACTAT GACCAGGGGG AGTTGTGAAC ACCTCATCAG 
    TTAAGTTGCG CTGTAATGTT TCTGTAATCG AAAACTTGTT CGACAAAACA 
    ATTGCGCTTC CAGATATGCA ATTTCATTAA TCTGCTTGAA CT

    Gene models with high sequence identity

    1. AT1G67320.2 [+] show detail - DNA primase, large subunit family
      E-value: 0; Score: 635.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR DNA primase, large subunit, eukaryotic 1.9e-202
    HMMPanther DNA primase, large subunit, eukaryotic/archaeal 1.6e-157
    HMMPfam DNA primase, large subunit, eukaryotic/archaeal 1e-89

    See the detailed result >

    AT1G67320.2

    Model type
    Protein coding
    Short Description
    DNA primase, large subunit family
    Computational Description
    DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238).
    Link
    InterPro Scan - TAIR