K32325

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32325

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32325

Determination of introduced cDNA(s)

  • J033135F07 - Rice Full-length cDNAs - Original: J033135F07

    full reading [+] show sequence

    Nucleotide sequence: J033135F07 - full reading
    GACAGGAACT TGTTTGTTTT GCAGCCACCA CCACCACCAC CCTCCAACTG 
    TCCAACCCCA CACAGGTCAG CACAAGGCAT GGGGGAGCTT AGCTAGCTTT
    GCCTTTTGCC TTCTCCATGG CTCCATCCTG TGAGCACATA TACTACTAAT
    CCACCCCTAA TCCGTTGCAG AAAGCCTTTG CTCTCTTCTT GCTTTCCTCA
    AATCGTTGTG TCAAGCCAGC AGCTGGAGCA GAGCAGCCAT GGCTTCCTAG
    GCCTACCTAG ACGAAGATGC GGAGTTAGGC ACGGACTCTT TTGACCAGCC
    TGGATGTTAA ATCAGTGAAC TTCCTTGGAT GCTTAAAGAA AGTGGAGTGA
    GCTTTTCTCT AGATTTGCAG TTGTACAAGC AATATTGACC ATCATGTCTG
    TTGAGGCGGT GAAGCAGATT GTGCCTGCAC ACCTGGTTAA ACCTGCTGTT
    GATCCTGTTC ATGCAAAGGC GAGCAAGGCC GGAAAAGATG GCAGGTCAGA
    CCTTATTGCT AAGGAGATTT TAGAGGAGCA AAAGCCGGCT CATCGGCGGC
    AAGAGTCTTC TGAATCTATA TTGGACAAGG GTCCTTCTAA CGTTGGTTCA
    GACTCTGGTG TCTTGGATGT GCCACTAACC CCAAAAGGAG ACTCTGGGGA
    GCTGAAAGAA ATCCAAGGCT TGGATTGCAA CGGGAATCAG GAGAAGAAGA
    CGGCGCAAAA GAGCAGCACT AGCGAGAGCT TTGCTTCTGC TAAAGTTAGC
    GACGGGACGA ATGGTCTGAG GAAGACATGT GGAAGTGGCA AGGTCAGTGA
    TACAGCTGAT TCTACTGAGA GTGGGAAGAG CAGCATGTGC CGTCCGAGCA
    CGAGCAGCAA CGTCAGTGAT GAGAGCTCGT GCAGCAGCCT GAGCAGCAGC
    ACAACGAAGC CGCACAAAGG GAGTGATTCA AGGTGGGAAG CAATCCGGAT
    GATCAGGTCC AAGGATGGTA TTCTAGGTTT GAGCCATTTT AGATTGCTCA
    AGAAATTGGG CTGTGGTGAT ATTGGTAGCG TCTACCTCTC TGAATTGAGT
    GGTACAAGGA GTTACTTTGC AATGAAGGTC ATGGACAAGG GGTCTCTAGC
    AAGTCGGAAG AAGCTGCTTC GAGCGCAAAC AGAGCGGGAG ATCCTGCAAT
    CTCTGGATCA TCCATTTCTG CCAACACTGT ATACCCACTT CGAGACAGAT
    AAGTTCTCAT GCTTGGTTAT GGAGTTCTGC CCAGGAGGGG ACCTGCACAC
    TCTTCGACAA AGGCAGCCTG GAAAGCATTT CTCAGAGCAA GCAGCAAAGT
    TCTATGTGGC AGAGGTTCTT CTTGCATTAG AATACCTGCA TATGCTTGGG
    ATTATATACC GTGATCTGAA ACCAGAAAAT GTCCTTGTCC GGGAGGATGG
    GCACATAATG CTGTCTGATT TTGATCTCTC CCTTCGTTGT GCTGTAAGCC
    CTACTGTTGT CAAGTCCGCG AATCCTGGAC CAGATGCGTT GCAGAGGAAC
    AATCAAGCTT ATTGTGTCCA GCCTGCCTGT ATTCAGCCAT CCTGCATCCA
    GCCATCATGT GTAGCTCCAA CAACCTGCTT TGGTCCCCGT TTTTTCTCCT
    CCAAGTCTAA GTCCAAGTCC AAGAAGGAGA AGAAATCAAA GCCTGAGGTT
    GTCAACCAAA TTAGCCCACT GCCGGAGCTC ATCGCTGAGC CGACTGATGC
    TCGGTCCATG TCCTTTGTTG GCACTCATGA GTACTTGGCA CCAGAAATCA
    TCAAGGGAGA GGGTCACGGC AGTGCTGTGG ATTGGTGGAC CTTTGGCATA
    TTCCTGTATG AACTCTTGTT CGGTAAGACC CCTTTCAAGG GATCAGGAAA
    CCGGGCTACA CTCTTCAATG TTGTTGGCCA GCCCCTGCGG TTCCCGGAAT
    CCCCAATGGT GAGCTTCTCA GCCAGGGACC TGATAAGAGG ATTGCTGGTC
    AAGGACCCGC AGCACCGTCT TGCCTACAAG CGTGGGGCGA CGGAGATAAA
    GCAGCATCCA TTCTTTGAGG GCGTGAATTG GGCGCTCATA CGATGTGCAA
    GCCCTCCTGA GATACCCAAG CCAGTTGAGC TCGAGCGCCC ACCAAAGCCA
    GCACCAGCTA CTGAGAAGGT TGCCCCGGCT GCCAACCAGA AGGGCTCAGA
    CAATTATCTA GAGTTCGAGT TCTTCTAGGT TTGCTTTCCT TTGTGTTTCT
    GAACAGGGTT GGTGCATGCA AGCTGATGTA TGAAAGGATG GCTTAGAAAT
    ATTTTGTTTA GGTTATTAGA TGTATTCCGA GCAACCTTTA TTTTTCATTG
    AAGTGCTTAT GATCTAATCC GTCCTTCGCA TGTTGTAATT TTTAATTAAA
    TCTAGTGATG ATGCTTGAAA GGATGTGGTA CCCTGTTTCA CCTGGCACTA
    TTAATTCCAG TTTTGCTTCA GAATAATTGC ATGTTTGCAA CTGAAGCTTC
    TTTGC

    Gene models with high sequence identity

    1. AT5G47750.1 [+] show detail - D6 protein kinase like 2
      E-value: 0; Score: 738.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.3e-59
    PatternScan Serine/threonine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 44.428
    HMMPanther NONPHOTOTROPIC HYPOCOTYL PROTEIN 1(PHOTOTROPI 1.1e-247
    HMMPanther SERINE/THREONINE PROTEIN KINASE 1.1e-247
    HMMSmart Serine/threonine-protein kinase domain 5.9e-88
    HMMSmart Tyrosine-protein kinase, catalytic domain 0.0000016
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-36
    HMMPfam Serine/threonine-protein kinase-like domain 9.9e-21
    superfamily Protein kinase-like domain 7.9e-85

    See the detailed result >

    AT5G47750.1

    Model type
    Protein coding
    Short Description
    D6 protein kinase like 2
    Computational Description
    D6 protein kinase like 2 (D6PKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 1 (TAIR:AT4G26610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR