K32325

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32325

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32325

Determination of introduced cDNA(s)

  • J033135F07 - Rice Full-length cDNAs - Original: J033135F07

    full reading [+] show sequence

    Nucleotide sequence: J033135F07 - full reading 
    GACAGGAACT TGTTTGTTTT GCAGCCACCA CCACCACCAC CCTCCAACTG 
    TCCAACCCCA CACAGGTCAG CACAAGGCAT GGGGGAGCTT AGCTAGCTTT 
    GCCTTTTGCC TTCTCCATGG CTCCATCCTG TGAGCACATA TACTACTAAT 
    CCACCCCTAA TCCGTTGCAG AAAGCCTTTG CTCTCTTCTT GCTTTCCTCA 
    AATCGTTGTG TCAAGCCAGC AGCTGGAGCA GAGCAGCCAT GGCTTCCTAG 
    GCCTACCTAG ACGAAGATGC GGAGTTAGGC ACGGACTCTT TTGACCAGCC 
    TGGATGTTAA ATCAGTGAAC TTCCTTGGAT GCTTAAAGAA AGTGGAGTGA 
    GCTTTTCTCT AGATTTGCAG TTGTACAAGC AATATTGACC ATCATGTCTG 
    TTGAGGCGGT GAAGCAGATT GTGCCTGCAC ACCTGGTTAA ACCTGCTGTT 
    GATCCTGTTC ATGCAAAGGC GAGCAAGGCC GGAAAAGATG GCAGGTCAGA 
    CCTTATTGCT AAGGAGATTT TAGAGGAGCA AAAGCCGGCT CATCGGCGGC 
    AAGAGTCTTC TGAATCTATA TTGGACAAGG GTCCTTCTAA CGTTGGTTCA 
    GACTCTGGTG TCTTGGATGT GCCACTAACC CCAAAAGGAG ACTCTGGGGA 
    GCTGAAAGAA ATCCAAGGCT TGGATTGCAA CGGGAATCAG GAGAAGAAGA 
    CGGCGCAAAA GAGCAGCACT AGCGAGAGCT TTGCTTCTGC TAAAGTTAGC 
    GACGGGACGA ATGGTCTGAG GAAGACATGT GGAAGTGGCA AGGTCAGTGA 
    TACAGCTGAT TCTACTGAGA GTGGGAAGAG CAGCATGTGC CGTCCGAGCA 
    CGAGCAGCAA CGTCAGTGAT GAGAGCTCGT GCAGCAGCCT GAGCAGCAGC 
    ACAACGAAGC CGCACAAAGG GAGTGATTCA AGGTGGGAAG CAATCCGGAT 
    GATCAGGTCC AAGGATGGTA TTCTAGGTTT GAGCCATTTT AGATTGCTCA 
    AGAAATTGGG CTGTGGTGAT ATTGGTAGCG TCTACCTCTC TGAATTGAGT 
    GGTACAAGGA GTTACTTTGC AATGAAGGTC ATGGACAAGG GGTCTCTAGC 
    AAGTCGGAAG AAGCTGCTTC GAGCGCAAAC AGAGCGGGAG ATCCTGCAAT 
    CTCTGGATCA TCCATTTCTG CCAACACTGT ATACCCACTT CGAGACAGAT 
    AAGTTCTCAT GCTTGGTTAT GGAGTTCTGC CCAGGAGGGG ACCTGCACAC 
    TCTTCGACAA AGGCAGCCTG GAAAGCATTT CTCAGAGCAA GCAGCAAAGT 
    TCTATGTGGC AGAGGTTCTT CTTGCATTAG AATACCTGCA TATGCTTGGG 
    ATTATATACC GTGATCTGAA ACCAGAAAAT GTCCTTGTCC GGGAGGATGG 
    GCACATAATG CTGTCTGATT TTGATCTCTC CCTTCGTTGT GCTGTAAGCC 
    CTACTGTTGT CAAGTCCGCG AATCCTGGAC CAGATGCGTT GCAGAGGAAC 
    AATCAAGCTT ATTGTGTCCA GCCTGCCTGT ATTCAGCCAT CCTGCATCCA 
    GCCATCATGT GTAGCTCCAA CAACCTGCTT TGGTCCCCGT TTTTTCTCCT 
    CCAAGTCTAA GTCCAAGTCC AAGAAGGAGA AGAAATCAAA GCCTGAGGTT 
    GTCAACCAAA TTAGCCCACT GCCGGAGCTC ATCGCTGAGC CGACTGATGC 
    TCGGTCCATG TCCTTTGTTG GCACTCATGA GTACTTGGCA CCAGAAATCA 
    TCAAGGGAGA GGGTCACGGC AGTGCTGTGG ATTGGTGGAC CTTTGGCATA 
    TTCCTGTATG AACTCTTGTT CGGTAAGACC CCTTTCAAGG GATCAGGAAA 
    CCGGGCTACA CTCTTCAATG TTGTTGGCCA GCCCCTGCGG TTCCCGGAAT 
    CCCCAATGGT GAGCTTCTCA GCCAGGGACC TGATAAGAGG ATTGCTGGTC 
    AAGGACCCGC AGCACCGTCT TGCCTACAAG CGTGGGGCGA CGGAGATAAA 
    GCAGCATCCA TTCTTTGAGG GCGTGAATTG GGCGCTCATA CGATGTGCAA 
    GCCCTCCTGA GATACCCAAG CCAGTTGAGC TCGAGCGCCC ACCAAAGCCA 
    GCACCAGCTA CTGAGAAGGT TGCCCCGGCT GCCAACCAGA AGGGCTCAGA 
    CAATTATCTA GAGTTCGAGT TCTTCTAGGT TTGCTTTCCT TTGTGTTTCT 
    GAACAGGGTT GGTGCATGCA AGCTGATGTA TGAAAGGATG GCTTAGAAAT 
    ATTTTGTTTA GGTTATTAGA TGTATTCCGA GCAACCTTTA TTTTTCATTG 
    AAGTGCTTAT GATCTAATCC GTCCTTCGCA TGTTGTAATT TTTAATTAAA 
    TCTAGTGATG ATGCTTGAAA GGATGTGGTA CCCTGTTTCA CCTGGCACTA 
    TTAATTCCAG TTTTGCTTCA GAATAATTGC ATGTTTGCAA CTGAAGCTTC 
    TTTGC

    Gene models with high sequence identity

    1. AT5G47750.1 [+] show detail - D6 protein kinase like 2
      E-value: 0; Score: 738.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.3e-59
    PatternScan Serine/threonine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 44.428
    HMMPanther NONPHOTOTROPIC HYPOCOTYL PROTEIN 1(PHOTOTROPI 1.1e-247
    HMMPanther SERINE/THREONINE PROTEIN KINASE 1.1e-247
    HMMSmart Serine/threonine-protein kinase domain 5.9e-88
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.6e-06
    HMMPfam Serine/threonine-protein kinase-like domain 1.2e-36
    HMMPfam Serine/threonine-protein kinase-like domain 9.9e-21
    superfamily Protein kinase-like domain 7.9e-85

    See the detailed result >

    AT5G47750.1

    Model type
    Protein coding
    Short Description
    D6 protein kinase like 2
    Computational Description
    D6 protein kinase like 2 (D6PKL2); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleolus, nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase like 1 (TAIR:AT4G26610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR