K32343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32343

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32343

Determination of introduced cDNA(s)

  • J033051E10 - Rice Full-length cDNAs - Original: J033051E10

    full reading [+] show sequence

    Nucleotide sequence: J033051E10 - full reading
    GATCATATCG CTCACTCTGC ATGGCTTCGG CTTCTTCTGT CAGCTTAATG 
    CTGCTCGTGG CTGCAGCTAT GGCCTCAGCC GCCTCGGCGC AGCTGTCGGC
    GACGTTCTAC GACACGTCGT GCCCAAACGC ATTGTCCACC ATCAAGAGCG
    CAGTGACGGC CGCCGTGAAC AGCGAGCCCC GAATGGGAGC CTCGCTGGTC
    AGGCTGCACT TCCACGACTG CTTCGTCCAA GGCTGTGACG CGTCTGTTCT
    GCTGTCCGGC CAGGAGCAGA ATGCAGGCCC GAACGCTGGG TCACTTCGGG
    GATTCAACGT CGTCGACAAC ATCAAGACGC AGGTCGAGGC CATCTGCAGC
    CAGACCGTCT CCTGCGCCGA CATCCTCGCC GTCGCCGCCC GTGACTCCGT
    CGTCGCGCTC GGAGGGCCGT CGTGGACGGT TCTATTGGGA AGAAGGGACT
    CCACCACTGC GAACGAAAGC CAAGCAAATA CCGACCTCCC TGCCCCTTCC
    TCTAGCCTCG CTGAACTTAT CGGCAATTTC TCCAGAAAGG GACTCGACGT
    AACCGACATG GTTGCTCTCT CAGGCGCACA CACGATCGGG CAGGCGCAGT
    GCCAGAACTT CAGGGACAGG CTCTACAACG AGACAAACAT CGACTCCAGC
    TTCGCGACGG CGCTCAAGGC CAACTGCCCA CGGCCGACGG GCAGCGGCGA
    CAGCAACCTG GCGCCGCTGG ACACGACGAC GCCCAACGCC TTCGACAGCG
    CCTACTACAC CAACCTGCTG TCCAACAAGG GCCTCCTGCA CTCCGACCAG
    GTGCTCTTCA ACGGCGGCAG CACGGACAAC ACGGTCAGGA ACTTCTCCTC
    CAACACGGCG GCGTTCAACA GCGCCTTCAC GGCGGCCATG GTGAAGATGG
    GGAACATCTC GCCCTTGACT GGAACCCAGG GGCAGATCAG GCTCAACTGC
    TCCAAGGTTA ACTAGCCGGT GATGACGAGT ACGTGATGGT CTCAGGGAAT
    AAAGCTAGGC CCCGACATTG CTGCCAATAG CGTGCAGCTA GCTGTGGCCA
    TCTCATCACT TTCATGGTTC AATGGTTTCA TCAGCAAGTG CACGGAACAG
    ACTAGAGAGT GTAGGTGTAT GCATGTGTGA TGTCATGTAA CGAGTTGCCA
    TGCAAAGGCA TGAGGATTAC GGACCTATCT TTCGTCGTAA TCCTAGCAGC
    TACAGATTTC AACTGTCGTG TTAACCAAGT GAAGTGCTAG TTTCG

    Gene models with high sequence identity

    1. AT5G05340.1 [+] show detail - Peroxidase superfamily protein
      E-value: 3e-100; Score: 362.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Plant peroxidase 8e-74
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-35
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-35
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-35
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-35
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1e-35
    Gene3D no description 6.9e-58
    ProfileScan Haem peroxidase, plant/fungal/bacterial 76.082
    superfamily Haem peroxidase 1.6e-112
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.9e-82

    See the detailed result >

    AT5G05340.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR