K32345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32345

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32345

Determination of introduced cDNA(s)

  • J033111K19 - Rice Full-length cDNAs - Original: J033111K19

    full reading [+] show sequence

    Nucleotide sequence: J033111K19 - full reading 
    GAGGTGGCCT CCTCCCCGCG ATTCCCGTGT GAATTTGCTC TTTCTTCCCG 
    GATTTTTCGA CTTTCTTCTT CTTCTTGGTT TGCTCTTCTT CTTTCTTGGC 
    GGTCTGCACC CATTCGGAGT CCGAGCTCAT CTCCGAGTCC ATGGCGCCTC 
    TCGCCTTCGA TGGCTGGAAC TGAAATACTA GGCATTAGCG CCACTTATCT 
    TGCTTCGATT TGGTAAATTT TGCTCGATTC CTTCATCGTG GAGTTGTGCT 
    GTTCTTCGTA CTGGAGGTGT GTCCTTTTTA ATGATTGCTA ATATTCTTGG 
    AAAGCAGGCA CGCCTGCCAT TGCTGAACTC GATGTTTTCT CATCGATTGG 
    TCGGGATATT GCCGTTGATA GATTCCCCTG CAGTGCTCCT TTTCGTCTCT 
    TCCATTCTCC TCTCAAATTC GCCTTGACAT TTTGGTCGGC ACTGTACTTT 
    TGTGGTGGTG GCCACTGGCC AACAATGTTC AGGCCTGGAA CGATCGCCTG 
    TGTGGCTAAT TCGGCGCGCA TTTTGCTGAA AAGTTTGCGG GCTTTTATCC 
    TGTTTGCTGC TCTACCGGGT CACTGCTCTG CCAGTTTTGT CTCAATTTCT 
    GTGATGCTTT CTGTGCCATA GCTTTCAAAT GTTGGCTTTG GTAAGGAGGG 
    GATTGAGATA GGTTGGGTTA TCTGAGTGCA CACTTCACTA AAAAGTTTGG 
    ATCCTTTTGT CCATTCTGCT GTGATTCCGT CGGAATTTGG CAATTTTCGC 
    ATCGGGTGGA TTCTCCCCAG CTAAGCTACG AGCAATGCTT CTCGGACTAG 
    AGAAAAATCA GCACAACGGG GAGGACACAT CGCCTGAGGC CAACGATTCC 
    GGCGAGCTGG ACGACCAGAG GAGCATGGAG TGCTCCACCT CCACCGAAAT 
    GTCGAGCAAC AGTGGCCACA GATCAAGAAA CCGAGCTCAG GACGACGACA 
    GCTTCGACTC CGAGAGCAGC TCGTCGGGCC CGCCGACGGT GAAGAGGCCG 
    GCGGCGGTGA CCGCCTTGCT GCCACCGTTC TCTAGGCCGA CGCCGTCGAA 
    GTGGGATGAT GCAGAGAAGT GGATTTCTAG CCCCACGGCG AACCGCGGTG 
    GCCGTGTGGG GAGTGCAGCT GGGGCTGCGC CGAAGAAATC GGCGCTGGCA 
    TTTCCTGAAC ATGTAAGCCG GCCTCCAGCC GTTGCTAAGG TGGTTGCTGA 
    GGTCCCCATC AACACTGGAA CCTTGGTGAA GAATTCAGTT GCTCTCGCAC 
    AGCCTATTTC ATTTAATCCT GCACAAAGTG CTTCGATAGT TGATGAACCA 
    GCTCCTGCAG TTAGGTCTGT TTCGATGAGA GACATGGGCA CAGAAATGAC 
    TCCTATTGCC AGCCAGGAGC CCTCTCGGAC TGGGACTCCT ATTATAGCTT 
    CTAGTCCAAC CTCCTCTCGG ACACCAACAC CACAACGTAA TGCAGAAATC 
    AGTATTGGTG AATTTGGTCC AAATAAGATG GAAATGTCTG AGGAGGAACT 
    ACAAATGAAT ACAAGAAAGG AAATCATGGA TCTTGGCCAA CGGCTGGGAA 
    AGACAACTAT AGCTGCATGG GCTAGCAAGG AAGAGAAATC TACAACAAGT 
    TTCGCAAATG TCATAACCGA CAAGGCTGTA GAAATCGACA GAGAGGCTCG 
    TGCTGCAGAT TGGGAGGAGG CAGAGAAAGC AAAATATCTT GCAAGGTTTC 
    AGAGGGAAGA GGTAAAGATT CAAGCTTGGG AAAACCACCA GAAAGCAAAA 
    ATTGAAGCTG AAATGAAGAG GATGGAGGCA AAGATAGAGA TCAAGAGAGC 
    TCGCGAGCAG GACAGGCTTT CGAGCAAGTT GGCAGCTGCA AGGCAAGGCA 
    GAGGCGAGGA GGGAGGCCGC TGAGTCCAGG AAGAACCAAG AAGCAGCAAG 
    AACTGAAGAG CAGGCGGCTC AGATCCGGAA AACCGGGCAC ATACCTTCCT 
    CAATCTCCTG CTGGTGCTGG TGCCTGTGAT TCTTCACTCT GCCATGATCA 
    TCTGTTATTT GGGTAGAAGA AAAATACTTG CTCCTTGCAC GACCATGTAA 
    AATATTCGCT ACTGGTTGGT TCATCGTTCA GTGATCAATG CCAATGAGTC 
    GCCATTTTTG TCC

    Gene models with high sequence identity

    1. AT2G02170.2 [+] show detail - Remorin family protein
      E-value: 2e-35; Score: 147.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Remorin, C-terminal 2.7e-22
    HMMPfam Remorin, C-terminal 8.9e-09

    See the detailed result >

    AT2G02170.2

    Model type
    Protein coding
    Short Description
    Remorin family protein
    Computational Description
    Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT1G30320.1); Has 3690 Blast hits to 2594 proteins in 496 species: Archae - 6; Bacteria - 904; Metazoa - 645; Fungi - 344; Plants - 595; Viruses - 5; Other Eukaryotes - 1191 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR