K32346

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32346

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32346

Determination of introduced cDNA(s)

  • J013042H09 - Rice Full-length cDNAs - Original: J013042H09

    full reading [+] show sequence

    Nucleotide sequence: J013042H09 - full reading 
    GGGCTTCGAT TTGGGAGTAA GCTTTACCAG GAGCAGTGCG ATGGATTCCA 
    GCAGCGCCGA GATCCTCATC GACCTCGGTG GCTTCCGGCT ATACAAAGAT 
    GGCCACGCCG ACCGTGCCGG CGGCATGGAG AGTGTGCCTG CCGGCTACGA 
    CGACGAGACC GGCGTCACGT CCAAGGACGT CGTCATCGAC GCTGTCACCG 
    GCGTGTCCGC GCGCCTCTAC CTACCACCGT GCATCCAGCC AGCTACCGAC 
    GACGACGGTA AGAAGCTCCC GATCCTCCTC TTCTTCCATG CTGGCTACTT 
    CGTCGTCGGG TCAGCGAGCT GGCCTCCTGT CCACCGCTAC ACCAACTCTG 
    TCGTCGCAAG CGCCCGCGTC GTCGCCGTCG CCGTCAACTA CCGCCTCGCG 
    CCCGAGCACC TGCTCCCGAC AGCCTACGAC GACTCATGGG CGGCGCTCAG 
    CTGGGCGGTG TCCGGCGCCG ACCCTTGGTT CCGCGCACGG TGACACCGGC 
    CGAGTCTTCT TGTCCGGCGC CAGCGCCGGC GGGAACATAG CCCACAACAT 
    GACCATCGCC GTGGGCGTGC GCGGCCTGGA CGCCGTCGTA CCGGCGCCAC 
    GCATAGAGGG CACGATCTTG CTCCACCCTT CCTTCTGCGG CGAGACGAGG 
    ATGGAGGTTG AGCCGGAGGA GTTCTGGGGC GGCGTCAAGA AGAGATGGGC 
    GGTCATCTTC CCCGGCGCGA ACGGCGGGCT GGACGATCCG CGGATGAACC 
    CGATGGCCGC CGGCGCGCCG AGCCTGACAA AGCTGGCGTG CGAGAGGATG 
    CTGGTCTGCT CGGCGGGGTT CGATCCGAGG AGGACAAGGG ATCGGGCGTA 
    CTACGACGCA GTCAAGGCCA GCGGGTGGGG ACGCGAGGTG GACTGGTTCG 
    AGTCGGAGGG TGAGGGCCAC CACTTCTTCG TCGACAAGCC CGGCAGCCAC 
    GAGGCCAGCA AGCTCATGGA ACGAGTGGCT GCTTTCATTG CTGGCCATTA 
    AACTGTGCTT CCAGCTGGAT AATTTGCCTC GTGTTTCTAA GAGCAAGGAT 
    AACAGTAGAG CTCACTATCT ACTATTAGCA CATCTTAAAG CCAACACATA 
    TAATAGATTA GCTATAAGGT TGGCTATAAT TTTTCTTTTC CTATCTCTAT 
    ATCTCACTTA TACATTTATT ATTTTTGTCT TGGAGCTTGT GATAAGCTAG 
    CTCTTGTATG AGAGCCAATA CCTTTGATTT TTTGTTACCT CTCTACTCCA 
    TATAAGCTTA TAGTAAGCTT ATAGCTCACT ATT

    Gene models with high sequence identity

    1. AT1G47480.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 5e-45; Score: 83.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 1.6e-26
    superfamily alpha/beta-Hydrolases 3.4e-23
    HMMPanther CARBOXYLESTERASE-RELATED 8.6e-39
    HMMPanther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES 8.6e-39
    HMMPanther CARBOXYLESTERASE-RELATED 2.2e-29
    HMMPanther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES 2.2e-29
    Gene3D no description 5.4e-26
    Gene3D no description 5.1e-21
    HMMPfam Abhydrolase_3 1.3e-17
    HMMPfam Abhydrolase_3 4.9e-18

    See the detailed result >

    AT1G47480.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 13 (TAIR:AT3G48700.1); Has 8596 Blast hits to 8578 proteins in 1414 species: Archae - 104; Bacteria - 4918; Metazoa - 486; Fungi - 808; Plants - 1365; Viruses - 3; Other Eukaryotes - 912 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR