K32402

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32402

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32402

Determination of introduced cDNA(s)

  • J013063M10 - Rice Full-length cDNAs - Original: J013063M10

    full reading [+] show sequence

    Nucleotide sequence: J013063M10 - full reading 
    GATTGAACGC ACGCTACACT GCAAGAAAGG CAAGTATAGG GGTGGCAGGT 
    AGTTTATATT CACTGGAAAC CGAGAACTTC ACTCCTCCCA GCACTCCACA 
    CTAGGAGGAT GCTCACTGTC TGAATGACTG ACTGGCTGCT GCTGCTGCTC 
    ATTCCTTCTC CTACTCTGCC TGCCTCCTCT GCTGTGTCCT TGGGAGAATT 
    CTTCAGGGAC AGTATCCCTG CAGAGGTGAG ATCATGGGAC AGTCGAAGAA 
    GAAGTTCCGC GGAGTCAGGC AGCGCCACTG GGGCTCCTGG GTCTCCGAGA 
    TCAGGCACCC TCTCCTTAAG AGGAGGGTGT GGCTGGGTAC CTTTGAGACG 
    GCGGAGGAGG CGGCGCGGGC GTACGACGAG GCCGCCATCC TGATGAGCGG 
    CCGCAACGCC AAGACCAACT TCCCAGTCGC GAGGAACGCC ACGGGGGAGC 
    TCACACCGGC GGCTGCGGTG GCAGGGCGGG ATGGCCGTGT CGGCGGCGGC 
    AGCGGCAGCT CGTCCTCAAT GACGGCCAAC GGCGGCGGGA ACAGCCTGAC 
    TCCAGCTGGG TCATGACCGT CGAGCTCAAC AAGGACACGG CCGTGTCGTC 
    GGCTGCGACG GTGGCAGCAG CAACAGCAGT GTCGTCCAGC GACCAGCCGA 
    CTCCGAGTGA CAGCACAGTC ACAACGACGT CCACGTCCAC CACGGGCTCG 
    CCGTCGCCAC CACCTCCGGC AATGGACGAC GAGGAGAGGA TCGCGCTGCA 
    GATGATCGAG GAGCTGCTGG GCAGGAGCGG CCCGGGCTCG CCGTCACATG 
    GGCTGCTGCA CGGTGGTGAA GGTAGCCTCG TCATCTGAAT TCCGGAAGAA 
    CAGGAAAGAA ATTGAAAATG CAAGGTTAAA ACAGCATGAT CAGGTCACCA 
    TCTAAGATCA AGGATCTGGT AGGGTGGTTG GTGCACAGGC AGTTAAGATT 
    GCTACATATG ATAGGTATAT CTCTATTACT ACTACATATC CAGCTTAATT 
    AGGAAACAAT TATAAGATCG ATTACTACTG TGTGAAGTGA AGCTGTGTAT 
    TTATTAAAGA CTTACTTGTA TGTACAAGAC GTCCCCGTCA TTATAGTCAT 
    ACTGGTGAAA GCTCTGCTAT GTATCAACGT CATCAGAGAT CAGACTACAT 
    ATATATAAGT GGTGTCAACT TCTAATAAAA GTAAATAAAA ACATTGTAAT 
    TGTGT

    Gene models with high sequence identity

    1. AT1G15360.1 [+] show detail - Integrase-type DNA-binding superfamily protein
      E-value: 2e-21; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.5e-39
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.5e-22
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 7.3e-11
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 7.3e-11
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 21.957
    superfamily DNA-binding, integrase-type 5.2e-22
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 8.7e-17

    See the detailed result >

    AT1G15360.1

    Model type
    Protein coding
    Short Description
    Integrase-type DNA-binding superfamily protein
    Curator Summary
    Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.
    Computational Description
    SHINE 1 (SHN1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 23; Plants - 5843; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR