K32415

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32415

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32415

Determination of introduced cDNA(s)

  • J023139E02 - Rice Full-length cDNAs - Original: J023139E02

    full reading [+] show sequence

    Nucleotide sequence: J023139E02 - full reading 
    GTCCCCGAAA CGAAATGGCA GTGGCGTTCC ACTGAACCAG GCCAAGCCAG 
    ACGGACAAGA CTTCGCCGCA GCCGCGTCCT CCTCACCGCG CCGCCGTCGC 
    AATGGCTACG GCCATCGCAG CCTCCGCGTT CCTCTCCTCC GCCTTCGCCA 
    GGGACAGGCC GCTCCCCCGC CAGCGGCGCG CGGCGAGGCC CGCGACCCGC 
    CGCGCCGCCG CGGGGGGCCT GTCGGTGCGG TGCGAGCAGA GCGAGAAGCA 
    GAAGAGGCAG CCGCTCTCCG CGCTCGTCCC CCGCGAGCAG CGATTCATGT 
    TCGAAGGCGA CGAGCTCTGC GGCCCCGACA TATGGAACAC AACATGGTAC 
    CCTAAGGCTG CAGATCATGT AACTACTGAG AAGACATGGT ATGTTGTTGA 
    TGCAACAGAC AAGATTCTAG GTAGGCTTGC ATCCACCATT GCAGTACACA 
    TCAGAGGAAA GAATGAGGCC ACATACACTC CAAGTGTGGA CATGGGGGCT 
    TTTGTTGTTG TGGTTAATGC AGAGAAGGTT GCTGTTTCTG GCAAAAAGCG 
    GTCACAGAAG CTCTACAGGA GGCACTCTGG ACGGCCTGGT GGAATGAAAG 
    AAGAAACTTT TGATCAGCTT CAGAAAAGGA TTCCGGAGAG AATTATTGAA 
    CATGCAGTGC GTGGCATGCT TCCTAAGGGC AGACTGGGAA GAAGACTGTT 
    TACCCACCTC AAGGTGTACA AGGGAGCAGA ACATCCCCAT GAGGCTCAAA 
    AACCTGTTCC ACTGCCTATC AAGGATAAAA GAATACAGAA GTCTGAGAAG 
    TAGATAATTC CTGTGGAGAC TAAGAAAGAC ACAACAATCT CACGTAAATT 
    CCTCCCCTCG AGATTTTGTC CAATCTTTGG GATGTGATGC ATCTGTCTGT 
    TTGGGGAATG GAGTGTAAAA TTTTTTGTAA TTTACTTCCT CCAAAAGTTT 
    GTGTTTCTAA GTCATAGTTC TTGTTGATTA CATATCATGT ACCTAATACC 
    GTACGATTTT AAGCAATCCG ATATTTCCAT ATCC

    Gene models with high sequence identity

    1. AT1G78630.1 [+] show detail - Ribosomal protein L13 family protein
      E-value: 4e-75; Score: 278.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Ribosomal protein L13, bacterial-type 1.2e-82
    HMMPanther Ribosomal protein L13, bacterial-type 2.3e-81
    HMMPanther Ribosomal protein L13 2.3e-81
    Gene3D Ribosomal protein L13 4e-41
    PatternScan Ribosomal protein L13 0
    HMMPfam Ribosomal protein L13 1.4e-51
    superfamily Ribosomal protein L13 9.3e-46

    See the detailed result >

    AT1G78630.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L13 family protein
    Computational Description
    embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR