K32432

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32432

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32432

Determination of introduced cDNA(s)

  • J033090F20 - Rice Full-length cDNAs - Original: J033090F20

    full reading [+] show sequence

    Nucleotide sequence: J033090F20 - full reading 
    GGGGAGCAAA GCGGAGCGCA ATGGCGGGGT CGTCGGAGCC GACGCGGGTG 
    ATGGTCGCGG TGAACGAGTC CTCGATCAAG GGCTACCCGC ACCCCTCCAT 
    CAGCTGCCGC GCCGCCTTCG ACTGGATGCT CTCCAAGCTC GTCCGCTCCA 
    ACGCCGCAGG CTTCCACCTC CTCTTCCTCC ACGTCCAGGT CCCCGACGAG 
    GACGGATTTG ATGATATGGA TAGCATCTAT GCATCTCCAC CAGACTTTCA 
    GAGAATGAAA CAGAGAGACA AGATAAGAGG GCTTCACTTG CTCGAGCACT 
    TTGTGAATCA ATGCCATCAA CTGGAGATAA AATGTGAAGC ATGGATTAAA 
    CAAGGGGATC CAAAGGAAGT CATCTGCAGC GAGGTGAAGA GAGTTCAACC 
    AGATCTTCTA GTTGTGGGAA GTAGGGGCCT TGGACCATTT CAGAGGGTTT 
    TCGTGGGCAC AGTGAGCGAG TTCTGTGTTA AGCATGCCGA CTGTCCAGTC 
    ATCACCATCA AACGGAAGGC CGATGAAGCA CCGCAGGACC CTGTTGATGA 
    TTGATCCCTT CAATGTCATA CTTGAGAATG AGATATTCTT CACTGCTCAA 
    TGGGTTTAAT GTACAAAATA CAATATGGTA GTAGTGCTTG GAACTAGTAC 
    AAATCTTTGC CCAGTCCACC CCAAAACTAG AGTGAAGATG AAGAACACTA 
    TTGCGACAAG AGGTTGTATC CTATATGAGA TACATCCAAG TTTGTTATGA 
    ACCTAAGCTA CCTTGATGAT G

    Gene models with high sequence identity

    1. AT5G14680.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 7e-76; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.4e-21
    HMMPfam UspA 2.6e-20
    superfamily Adenine nucleotide alpha hydrolases-like 9.5e-25
    FPrintScan Universal stress protein A 6e-09
    FPrintScan Universal stress protein A 6e-09

    See the detailed result >

    AT5G14680.1

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G01520.1); Has 2663 Blast hits to 2654 proteins in 727 species: Archae - 164; Bacteria - 1702; Metazoa - 92; Fungi - 33; Plants - 646; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR