K32432

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32432

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32432

Determination of introduced cDNA(s)

  • J033090F20 - Rice Full-length cDNAs - Original: J033090F20

    full reading [+] show sequence

    Nucleotide sequence: J033090F20 - full reading
    GGGGAGCAAA GCGGAGCGCA ATGGCGGGGT CGTCGGAGCC GACGCGGGTG 
    ATGGTCGCGG TGAACGAGTC CTCGATCAAG GGCTACCCGC ACCCCTCCAT
    CAGCTGCCGC GCCGCCTTCG ACTGGATGCT CTCCAAGCTC GTCCGCTCCA
    ACGCCGCAGG CTTCCACCTC CTCTTCCTCC ACGTCCAGGT CCCCGACGAG
    GACGGATTTG ATGATATGGA TAGCATCTAT GCATCTCCAC CAGACTTTCA
    GAGAATGAAA CAGAGAGACA AGATAAGAGG GCTTCACTTG CTCGAGCACT
    TTGTGAATCA ATGCCATCAA CTGGAGATAA AATGTGAAGC ATGGATTAAA
    CAAGGGGATC CAAAGGAAGT CATCTGCAGC GAGGTGAAGA GAGTTCAACC
    AGATCTTCTA GTTGTGGGAA GTAGGGGCCT TGGACCATTT CAGAGGGTTT
    TCGTGGGCAC AGTGAGCGAG TTCTGTGTTA AGCATGCCGA CTGTCCAGTC
    ATCACCATCA AACGGAAGGC CGATGAAGCA CCGCAGGACC CTGTTGATGA
    TTGATCCCTT CAATGTCATA CTTGAGAATG AGATATTCTT CACTGCTCAA
    TGGGTTTAAT GTACAAAATA CAATATGGTA GTAGTGCTTG GAACTAGTAC
    AAATCTTTGC CCAGTCCACC CCAAAACTAG AGTGAAGATG AAGAACACTA
    TTGCGACAAG AGGTTGTATC CTATATGAGA TACATCCAAG TTTGTTATGA
    ACCTAAGCTA CCTTGATGAT G

    Gene models with high sequence identity

    1. AT5G14680.1 [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
      E-value: 7e-76; Score: 280.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.4e-21
    HMMPfam UspA 2.6e-20
    superfamily Adenine nucleotide alpha hydrolases-like 9.5e-25
    FPrintScan Universal stress protein A 6e-09
    FPrintScan Universal stress protein A 6e-09

    See the detailed result >

    AT5G14680.1

    Model type
    Protein coding
    Short Description
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Computational Description
    Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G01520.1); Has 2663 Blast hits to 2654 proteins in 727 species: Archae - 164; Bacteria - 1702; Metazoa - 92; Fungi - 33; Plants - 646; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR